RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 METTL26Q96S19 204 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 C2orf88Q9BSF0 95 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 CHCHD2Q9Y6H1 151 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 PDCD11Q14690 1871 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 ANKRD36A6QL64 1941 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 DIRC2Q96SL1 478 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 DCTN5Q9BTE1 182 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 LRRC37A2A6NM11 1700 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 PRR33A8MZF0 331 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 RFPL3SP0C7P2 107 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 OR9G1Q8NH87 305 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 GPR82Q96P67 336 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 ANK1P16157 1881 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 TRAV30A0A087WSZ9 112 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 ID1P41134 155 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 OR52E5Q8NH55 327 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 TMEM186Q96B77 213 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 C1QTNF5Q9BXJ0 243 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 OSTCQ9NRP0 149 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 COLQQ9Y215 455 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 RFNGQ9Y644 331 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 SCN8AQ9UQD0 1980 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 IFNL4K9M1U5 179 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 GCSAMLQ5JQS6 135 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 A0A1W2PQM1 296 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 J3QW42 95 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 RIPPLY3P57055 190 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 LYZL4Q96KX0 146 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 DEPPQ9NTK1 212 aa16.43■□□□□ 0.22
CCDC88B-202ENST00000356786 CCL1P22362 96 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 TMEM256Q8N2U0 113 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 FOXC2Q99958 501 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 FOXI3A8MTJ6 420 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 PRSS8Q16651 343 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 ACP7Q6ZNF0 438 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 LINC00470Q9BZP3 86 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 TRAV24A0A0B4J272 114 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 NPIPB6E9PJ23 425 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 TMEM144Q7Z5S9 345 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 LPAR2Q9HBW0 351 aa16.42■□□□□ 0.22
CCDC88B-202ENST00000356786 A0A1B0GW64 132 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 RNFT1Q5M7Z0 435 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 ZNF664Q8N3J9 261 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 PLPPR1Q8TBJ4 325 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 GNB1LQ9BYB4 327 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 RALGAPA1Q6GYQ0 2036 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 FOXC1Q12948 553 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 UNQ5815/PRO19632Q6UWF5 114 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 FAM169BQ8N8A8 192 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 CREBBPQ92793 2442 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 TRAV1-1A0A0B4J248 108 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 CDX4O14627 284 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 NDUFA2O43678 99 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 OSR1Q8TAX0 266 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 ATP5LO75964 103 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 TMEM170BQ5T4T1 132 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 ORMDL3Q8N138 153 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 OR2K2Q8NGT1 345 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 CHRNA10Q9GZZ6 450 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 ZNF257Q9Y2Q1 563 aa16.41■□□□□ 0.22
CCDC88B-202ENST00000356786 IGKV3D-15A0A087WSY6 115 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 APOMO95445 188 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 IGKV3-15P01624 115 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 WDR82Q6UXN9 313 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 DNM1P46Q6ZS02 220 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 EFEMP2O95967 443 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 TMEM30BQ3MIR4 351 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 GTF3AQ92664 365 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 KIR2DL4Q99706 377 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 NHP2Q9NX24 153 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 WDR83OSQ9Y284 106 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 PATJQ8NI35 1801 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 LINC00614P0C842 121 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 CD33P20138 364 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 PMS2CLQ68D20 193 aa16.4■□□□□ 0.22
CCDC88B-202ENST00000356786 AHRRA9YTQ3 701 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 FAM166AQ6J272 317 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 RPP25LQ8N5L8 163 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 RAMP3O60896 148 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 TIMP3P35625 211 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 PSMG4Q5JS54 123 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 CACNG8Q8WXS5 425 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 SS18L1O75177 396 aaPredicted RBP16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 OR10J3Q5JRS4 329 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 WBP1Q96G27 269 aa16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 INTS1Q8N201 2190 aaKnown RBP16.39■□□□□ 0.21
CCDC88B-202ENST00000356786 SIP14410 1827 aa16.38■□□□□ 0.21
CCDC88B-202ENST00000356786 IGHV3OR16-13A0A075B7E8 117 aa16.38■□□□□ 0.21
CCDC88B-202ENST00000356786 IGHV3-74A0A0B4J1X5 117 aa16.38■□□□□ 0.21
CCDC88B-202ENST00000356786 LINC01551Q86U37 167 aa16.38■□□□□ 0.21
CCDC88B-202ENST00000356786 SYT8Q8NBV8 401 aa16.38■□□□□ 0.21
CCDC88B-202ENST00000356786 MEF2CQ06413 473 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 FOXL1Q12952 345 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 FMC1Q96HJ9 113 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 C9JQL5 133 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 GPX1P07203 203 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 GZMBP10144 247 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 FAM74A4Q5TZK3 123 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 SCN5AQ14524 2016 aa16.37■□□□□ 0.21
CCDC88B-202ENST00000356786 GNG5P63218 68 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms