RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MFFQ9GZY8 342 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 ARL6Q9H0F7 186 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 OR5AC2Q9NZP5 309 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 TCF19Q9Y242 345 aa7.33□□□□□ -1.24
USP4-202ENST00000351842 RCL1Q9Y2P8 373 aaKnown RBP7.33□□□□□ -1.24
USP4-202ENST00000351842 FGF16O43320 207 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 BCL2L11O43521 198 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 KBTBD11O94819 623 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 MBPP02686 304 aaPredicted RBP7.32□□□□□ -1.24
USP4-202ENST00000351842 S100A9P06702 114 aaKnown RBP7.32□□□□□ -1.24
USP4-202ENST00000351842 METTL15P1P0C7V9 234 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 CD1BP29016 333 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 IER3P46695 156 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 CLINT1Q14677 625 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 SMCO1Q147U7 214 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 C5orf64Q2M2E5 130 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 OSR1Q8TAX0 266 aaPredicted RBP7.32□□□□□ -1.24
USP4-202ENST00000351842 TOLLIPQ9H0E2 274 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 FBXO7Q9Y3I1 522 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 TRRAPQ9Y4A5 3859 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 IGHV3OR16-8A0A075B7F1 116 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 A0A1W2PRX2 142 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 DNASE2O00115 360 aaPredicted RBP7.32□□□□□ -1.24
USP4-202ENST00000351842 ITGB1BP1O14713 200 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 TXNL1O43396 289 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 IFNA4P05014 189 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 H2AFB1P0C5Y9 115 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 SRPXP78539 464 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 TMEM56Q96MV1 263 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.32□□□□□ -1.24
USP4-202ENST00000351842 TMED3Q9Y3Q3 217 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 MMP24Q9Y5R2 645 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 TMEM56-RWDD3S4R434 201 aa7.32□□□□□ -1.24
USP4-202ENST00000351842 A0A1W2PN81 502 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 FAM24AA6NFZ4 105 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 ATP6V0E1O15342 81 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 EIF3GO75821 320 aaKnown RBP eCLIP7.31□□□□□ -1.24
USP4-202ENST00000351842 IGLV2-23P01705 113 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 S100PP25815 95 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 CHRNA7P36544 502 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 ZNF137PP52743 207 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 MLANAQ16655 118 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 NMSQ5H8A3 153 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 DHRS7BQ6IAN0 325 aaPredicted RBP7.31□□□□□ -1.24
USP4-202ENST00000351842 ATRAIDQ6UW56 229 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 UQCC3Q6UW78 93 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 UNQ5815/PRO19632Q6UWF5 114 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 ALKAL2Q6UX46 152 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 ACOT7LQ6ZUV0 252 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 SRSF12Q8WXF0 261 aaKnown RBP7.31□□□□□ -1.24
USP4-202ENST00000351842 MISP3Q96FF7 219 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 C2orf50Q96LR7 162 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 MGAM2Q2M2H8 2515 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 GPR137BO60478 399 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 IGHV3-11P01762 117 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 RLN2P04090 185 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 KIR2DS2P43631 304 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 RPL27AP46776 148 aaKnown RBP7.31□□□□□ -1.24
USP4-202ENST00000351842 C10orf91Q5T1B1 145 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 SLC25A24Q6NUK1 477 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 Q8N9W7 124 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 OR51M1Q9H341 326 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 RBKSQ9H477 322 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 PLEKHA3Q9HB20 300 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 RAB18Q9NP72 206 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 GPX4P36969 197 aaPredicted RBP7.31□□□□□ -1.24
USP4-202ENST00000351842 RELBQ01201 579 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 PRSS8Q16651 343 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 TMEM177Q53S58 311 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 ZNF546Q86UE3 836 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 C8orf31Q8N9H6 132 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 THAP6Q8TBB0 222 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 SPIN2AQ99865 258 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 SPIN2BQ9BPZ2 258 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 NMES1Q9C002 83 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 C1RLQ9NZP8 487 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 PITPNC1Q9UKF7 332 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 VPREB3Q9UKI3 123 aa7.31□□□□□ -1.24
USP4-202ENST00000351842 FAM74A7A6NL05 159 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 ATG12O94817 140 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 LGALS7P47929 136 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 UBE2KP61086 200 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 RPP30P78346 268 aaKnown RBP7.3□□□□□ -1.24
USP4-202ENST00000351842 FAM74A3Q4VXF1 159 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 SLC35E3Q7Z769 313 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 DTD1Q8TEA8 209 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 SFT2D1Q8WV19 159 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 MOB4Q9Y3A3 225 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 TEX50A0A1B0GTY4 177 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 UPK2O00526 184 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 SMIM6P0DI80 62 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 PF4V1P10720 104 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 IL15RAQ13261 267 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 Q6YL49 198 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 ARPC1AQ92747 370 aa7.3□□□□□ -1.24
USP4-202ENST00000351842 H0YIZ8 118 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 SYNGR2O43760 224 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 TMEM50AO95807 157 aa7.29□□□□□ -1.24
USP4-202ENST00000351842 IL6RP08887 468 aaPredicted RBP7.29□□□□□ -1.24
USP4-202ENST00000351842 PSMB6P28072 239 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms