RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 PLP1P60201 277 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 HIST1H2BCP62807 126 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 HIST2H2BEQ16778 126 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.55□□□□□ -0.56
RTN4-202ENST00000337526 ZNF600Q6ZNG1 722 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 MIR17HGQ75NE6 70 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 ZIC4Q8N9L1 334 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 FGFBP3Q8TAT2 258 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 CACNG8Q8WXS5 425 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 HIST1H2BHQ93079 126 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 C14orf144Q96I85 54 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 HIST1H2BNQ99877 126 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 HIST1H2BMQ99879 126 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 DEPPQ9NTK1 212 aa11.55□□□□□ -0.56
RTN4-202ENST00000337526 NUDT3O95989 172 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 ZNF883P0CG24 379 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 GLRX5Q86SX6 157 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 CYTL1Q9NRR1 136 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 TMEM106BQ9NUM4 274 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 PEX7O00628 323 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 NAPSAO96009 420 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 SAPCD1Q5SSQ6 148 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 TMEM144Q7Z5S9 345 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 RBFOX2O43251 390 aaKnown RBP eCLIP11.54□□□□□ -0.562e-9■■■■□ 21
RTN4-202ENST00000337526 FBXL15Q9H469 300 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 RAMP3O60896 148 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 EBLN2Q6P2I7 272 aa11.54□□□□□ -0.56
RTN4-202ENST00000337526 LOC105371242A0A075B767 164 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 B9A039 149 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 SS18L1O75177 396 aaPredicted RBP11.53□□□□□ -0.56
RTN4-202ENST00000337526 C1QTNF9P0C862 333 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 TMEM136Q6ZRR5 245 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 OR52E5Q8NH55 327 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 DYNLRB2Q8TF09 96 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 FOXD3Q9UJU5 478 aaPredicted RBP11.53□□□□□ -0.56
RTN4-202ENST00000337526 RAB9AP51151 201 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 ZNF497Q6ZNH5 498 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 KLK15Q9H2R5 256 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 IGHV3OR16-13A0A075B7E8 117 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 IGHV3-74A0A0B4J1X5 117 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 COLCA2A8K830 154 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 CLEC2AQ6UVW9 174 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 FAM19A2Q8N3H0 131 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 HIST1H4GQ99525 98 aa11.53□□□□□ -0.56
RTN4-202ENST00000337526 HEATR1Q9H583 2144 aaKnown RBP11.53□□□□□ -0.56
RTN4-202ENST00000337526 REG4Q9BYZ8 158 aa11.52□□□□□ -0.56
RTN4-202ENST00000337526 ZNF324O75467 553 aaPredicted RBP11.52□□□□□ -0.57
RTN4-202ENST00000337526 NPPCP23582 126 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 HEPN1Q6WQI6 88 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 F11RQ9Y624 299 aaKnown RBP11.52□□□□□ -0.57
RTN4-202ENST00000337526 MED13LQ71F56 2210 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 DOCK8Q8NF50 2099 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.52□□□□□ -0.573e-9■■■■■ 96.9
RTN4-202ENST00000337526 TAS2R60P59551 318 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 TMEM170AQ8WVE7 144 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 LRRK1Q38SD2 2015 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 YPEL1O60688 119 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 LEMD1Q68G75 181 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 ZNF324BQ6AW86 544 aaPredicted RBP11.52□□□□□ -0.57
RTN4-202ENST00000337526 FAM90A1Q86YD7 464 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 YPEL2Q96QA6 119 aa11.52□□□□□ -0.57
RTN4-202ENST00000337526 TRAV9-1A0A075B6T8 112 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 A0A1B0GUT8 65 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 C7orf71A4D174 169 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 RNFT1Q5M7Z0 435 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 FAM131CQ96AQ9 280 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 MRPL20Q9BYC9 149 aaKnown RBP11.51□□□□□ -0.57
RTN4-202ENST00000337526 UBE2CO00762 179 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 SERF1AO75920 110 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 C9orf106Q8NAJ2 232 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 MBD3L1Q8WWY6 194 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 NABP1Q96AH0 204 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 SMIM12Q96EX1 92 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 DPM3Q9P2X0 92 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 GBF1Q92538 1859 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 PRR19A6NJB7 356 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 FOXI3A8MTJ6 420 aaPredicted RBP11.51□□□□□ -0.57
RTN4-202ENST00000337526 APOBEC3AP31941 199 aaPredicted RBP11.51□□□□□ -0.57
RTN4-202ENST00000337526 FOXG1P55316 489 aaPredicted RBP11.51□□□□□ -0.57
RTN4-202ENST00000337526 DNLZQ5SXM8 178 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 ARTNQ5T4W7 220 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 WDR82Q6UXN9 313 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 TCF23Q7RTU1 214 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 TRBV20OR9-2A0A075B6H5 130 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 PGPEP1LA6NFU8 196 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 PRSS2P07478 247 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 AREGP15514 252 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 MEF2CQ06413 473 aaPredicted RBP11.51□□□□□ -0.57
RTN4-202ENST00000337526 MORN2Q502X0 79 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 ELOVL5Q9NYP7 299 aa11.51□□□□□ -0.57
RTN4-202ENST00000337526 RNASEH2CQ8TDP1 164 aaKnown RBP11.5□□□□□ -0.57
RTN4-202ENST00000337526 GPR82Q96P67 336 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 RNASE7Q9H1E1 156 aaKnown RBP11.5□□□□□ -0.57
RTN4-202ENST00000337526 PRDM13Q9H4Q3 707 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 WDR83OSQ9Y284 106 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 S4R3C0 116 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 GPX1P07203 203 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 ST6GALNAC3Q8NDV1 305 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 LINC01560Q8TB33 94 aa11.5□□□□□ -0.57
RTN4-202ENST00000337526 LINC00312Q9Y6C7 94 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms