RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 LINC00614P0C842 121 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 LINC00305Q7Z4B0 112 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 FLVCR1-AS1Q8TAF5 88 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 PGLYRP4Q96LB8 373 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 PAX1P15863 534 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 MS4A6AQ9H2W1 248 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 GDF9O60383 454 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 ZIC3O60481 467 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 ZNF324O75467 553 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 RPL23P62829 140 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 TRAV9-2A0A087WT02 112 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 ZNF137PP52743 207 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 C3AR1Q16581 482 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 TM4SF20Q53R12 229 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 IMMP1LQ96LU5 166 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 ZNF205O95201 554 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 OTORQ9NRC9 128 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 EML5Q05BV3 1969 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 IGHV3OR15-7A0A075B7D8 119 aa8.69□□□□□ -1.02
CCDC88A-202ENST00000336838 HIST1H1AQ02539 215 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 NXT2Q9NPJ8 142 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 C12orf77C9JDV5 145 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 LGALS3P17931 250 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 EEF1AKMT3Q96AZ1 226 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 GFI1Q99684 422 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 HIST1H2BLQ99880 126 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 R4GN57 208 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 NBEAP1P0C6P0 100 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 PVRIGQ6DKI7 326 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 SLC25A48Q6ZT89 311 aaKnown RBP8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 FOXJ2Q9P0K8 574 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 OPN3Q9H1Y3 402 aaPredicted RBP8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 ID4P47928 161 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 CCL13Q99616 98 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 CTAG1AP78358 180 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 SLC25A2Q9BXI2 301 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 RAMP1O60894 148 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 PCP4P48539 62 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 HIST3H2BBQ8N257 126 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 OR9G4Q8NGQ1 327 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 ITLN1Q8WWA0 313 aa8.68□□□□□ -1.02
CCDC88A-202ENST00000336838 CD40P25942 277 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 ACTL10Q5JWF8 245 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 GLRX5Q86SX6 157 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 RTN4RQ9BZR6 473 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 PLXNB1O43157 2135 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 SNRPD3P62318 126 aaKnown RBP8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 ARF6P62330 175 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 MESP2Q0VG99 397 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 ASCL2Q99929 193 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 AGFG2O95081 481 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 C1QL2Q7Z5L3 287 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 NUP210LQ5VU65 1888 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 ATRAIDQ6UW56 229 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 FOXA2Q9Y261 457 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 MGPP08493 103 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 SRSF12Q8WXF0 261 aaKnown RBP8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 LAMTOR2Q9Y2Q5 125 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 PPP1R32Q7Z5V6 425 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 C2orf88Q9BSF0 95 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 RNF115Q9Y4L5 304 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 HIGD1CA8MV81 97 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 H3BVH4 76 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 IGHV3-13P01766 116 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 IGHV3-7P01780 117 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 CACNG7P62955 275 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 C2orf83Q53S99 150 aa8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 PAQR4Q8N4S7 273 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-202ENST00000336838 TYMSP04818 313 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 TIMP3P35625 211 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 TMEM262E9PQX1 116 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 GHRHP01286 108 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 FAM106AQ4KMX7 169 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 PRR7Q8TB68 274 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 LOC389332A0A1B0GUA5 103 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 GRIFINA4D1Z8 144 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 F2Z2F3 143 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 TTC32Q5I0X7 151 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 C5orf30Q96GV9 206 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 NAPSAO96009 420 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 MRPL27Q9P0M9 148 aaKnown RBP8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 CFHR1Q03591 330 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 ECSCRQ19T08 205 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 FAM71F2Q6NXP2 309 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 RAXQ9Y2V3 346 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 TNFSF13O75888 250 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 SSTR5P35346 364 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 PRSS12P56730 875 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 CX3CL1P78423 397 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 ZNF502Q8TBZ5 544 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 NRN1Q9NPD7 142 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 C10orf91Q5T1B1 145 aa8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 ALKBH7Q9BT30 221 aaPredicted RBP8.66□□□□□ -1.02
CCDC88A-202ENST00000336838 ADRA2AP08913 450 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 SLC50A1Q9BRV3 221 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 LOC101059948A0A1B0GTJ6 334 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 CRYGSP22914 178 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 TSKUQ8WUA8 353 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 PRELID3AQ96N28 172 aa8.65□□□□□ -1.02
CCDC88A-202ENST00000336838 GDF15Q99988 308 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms