RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LYNX1G3V0Z9 82 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 SLC25A5P05141 298 aaKnown RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 LYNX1P0DP58 116 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 RUNX1Q01196 453 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 POU2AF1Q16633 256 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 PRSS8Q16651 343 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 DTX2Q86UW9 622 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 OR1P1Q8NH06 330 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 METRNQ9UJH8 293 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 A0A0B4J293 547 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 A0A1W2PPQ1 181 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 K7EM74 188 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 SUPT4H1P63272 117 aaKnown RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 LCN2P80188 198 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 C2orf68Q2NKX9 166 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 OR11H4Q8NGC9 324 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 KIAA1324LA8MWY0 1029 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 TCF21O43680 179 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 GATCO43716 136 aaKnown RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 IGHV2-70P01814 119 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 OR9G9P0C7N8 305 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 CLEC12BQ2HXU8 276 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 NABP2Q9BQ15 211 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 DANCRP0C864 163 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 SAA1P0DJI8 122 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-201ENST00000335508 NPPCP23582 126 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 GNG4P50150 75 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 TUSC1Q2TAM9 212 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 VMO1Q7Z5L0 202 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 LEAP2Q969E1 77 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 SEC11CQ9BY50 192 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 YAE1D1Q9NRH1 226 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 NAT8Q9UHE5 227 aa5.67□□□□□ -1.5
SF3B1-201ENST00000335508 RANBP2P49792 3224 aaKnown RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 TIMM23O14925 209 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 MYOD1P15172 320 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 CXCL2P19875 107 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 GUSBP1Q15486 140 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 WDR73Q6P4I2 378 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 BAGE2Q86Y30 109 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 C8orf31Q8N9H6 132 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 OR5AU1Q8NGC0 362 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 SAMD10Q9BYL1 202 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 BPESC1Q9GZL8 116 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 IGHV2-26A0A0B4J1V2 119 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 LOXP28300 417 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 LOXL3P58215 753 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 SRSF4Q08170 494 aaKnown RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 VAMP3Q15836 100 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 SEM1Q6ZVN7 128 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 GAFA1Q96PS6 74 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 PAXXQ9BUH6 204 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 GCN1Q92616 2671 aaKnown RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 RNF222A6NCQ9 220 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 SH2D7A6NKC9 451 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 LILRA1O75019 489 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 FSTL3O95633 263 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 WNT2P09544 360 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 FAM157CP0CG43 387 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 UBE2E1P51965 193 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 C5orf64Q2M2E5 130 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 OR4X2Q8NGF9 303 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 OR10G8Q8NGN5 311 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 VCX2Q9H322 139 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 MED12LQ86YW9 2145 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 A8MWL6 223 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 CIDEAO60543 219 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 ZP3P21754 424 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 ID1P41134 155 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 SP5Q6BEB4 398 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 PVRIGQ6DKI7 326 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 LURAP1LQ8IV03 231 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 OR5AN1Q8NGI8 311 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 EEF1AKMT3Q96AZ1 226 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 METTL26Q96S19 204 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 IGSF23A1L1A6 192 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 MT-ND6P03923 174 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 IZUMO4Q1ZYL8 232 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 C2orf83Q53S99 150 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 SSX7Q7RTT5 188 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 C5orf17Q8NAS9 161 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 ARPC1AQ92747 370 aa5.66□□□□□ -1.5
SF3B1-201ENST00000335508 RCC1LQ96I51 464 aaKnown RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 TP53BP1Q12888 1972 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF705GA8MUZ8 300 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 TSTD3H0UI37 97 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 J3QLI3 93 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 DNASE2O00115 360 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 CA2P00918 260 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF25P17030 456 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 EGR1P18146 543 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 TMEM14EPQ6UXP3 125 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 ZNF705AQ6ZN79 300 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 EAF1Q96JC9 268 aaPredicted RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 GPHA2Q96T91 129 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 GOLGB1Q14789 3259 aaKnown RBP5.65□□□□□ -1.5
SF3B1-201ENST00000335508 MSGN1A6NI15 193 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 DBX1A6NMT0 343 aa5.65□□□□□ -1.5
SF3B1-201ENST00000335508 OR2C1O95371 312 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms