RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 VWA8A3KMH1 1905 aa9.71□□□□□ -0.85
VPS39-201ENST00000318006 FCGR2BP31994 310 aaPredicted RBP9.71□□□□□ -0.86
VPS39-201ENST00000318006 CX3CL1P78423 397 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 TIMM23BQ5SRD1 257 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 VKORC1L1Q8N0U8 176 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 ZNF664Q8N3J9 261 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 COPS9Q8WXC6 57 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 OSTCQ9NRP0 149 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 IGKV3-7A0A075B6H7 116 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 LYPD3O95274 346 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 GFRA1P56159 465 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 SMAGPQ0VAQ4 97 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 SLC25A53Q5H9E4 307 aa9.71□□□□□ -0.86
VPS39-201ENST00000318006 FAM53AQ6NSI3 398 aaPredicted RBP9.71□□□□□ -0.86
VPS39-201ENST00000318006 ARHGEF17Q96PE2 2063 aaPredicted RBP9.7□□□□□ -0.86
VPS39-201ENST00000318006 NCOR1O75376 2440 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 J3QW42 95 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 ID3Q02535 119 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 UBE2V1Q13404 147 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 ANAPC13Q9BS18 74 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 GP6Q9HCN6 339 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 DOCK4Q8N1I0 1966 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 ADCYAP1P18509 176 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 MST1P26927 711 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 CIRBPQ14011 172 aaKnown RBP9.7□□□□□ -0.86
VPS39-201ENST00000318006 LINC00305Q7Z4B0 112 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 TEX29Q8N6K0 151 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 HIGD1CA8MV81 97 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 NPIPB6E9PJ23 425 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 NAPSAO96009 420 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 NBEAP1P0C6P0 100 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 TDGF1P3P51864 188 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 DLX6P56179 175 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 UNQ5815/PRO19632Q6UWF5 114 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 FDCSPQ8NFU4 85 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 EAF1Q96JC9 268 aaPredicted RBP9.7□□□□□ -0.86
VPS39-201ENST00000318006 IDI2-AS1Q9NZ38 188 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 TRAV1-1A0A0B4J248 108 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 UMODP07911 640 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 CELA3AP09093 270 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 IGFBP2P18065 325 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 MAJINQ3KP22 176 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 Q6AWC8 147 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 RNASE7Q9H1E1 156 aaKnown RBP9.7□□□□□ -0.86
VPS39-201ENST00000318006 UBTD1Q9HAC8 227 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 PHLDA3Q9Y5J5 127 aa9.7□□□□□ -0.86
VPS39-201ENST00000318006 PRSS8Q16651 343 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 TEX38Q6PEX7 206 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 OR10J6PQ8NGY7 276 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 FOXC2Q99958 501 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 LPAR2Q9HBW0 351 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 NHP2Q9NX24 153 aaKnown RBP9.69□□□□□ -0.86
VPS39-201ENST00000318006 TRAV30A0A087WSZ9 112 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 F2RL2O00254 374 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 LINC00271P0C7V0 271 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 ID1P41134 155 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 CSRP2Q16527 193 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 CCDC144NLQ6NUI1 221 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 LOC102723996A0A087X1L8 192 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 HTN1P15515 57 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 Q6ZT83 130 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 RABAC1Q9UI14 185 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 RTTNQ86VV8 2226 aa9.69□□□□□ -0.86
VPS39-201ENST00000318006 TMEM50AO95807 157 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 FOXL1Q12952 345 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 OCC1Q8TAD7 63 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 IFI27L2Q9H2X8 130 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 SYNGR3O43761 229 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 GZMBP10144 247 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 TMEM30BQ3MIR4 351 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 SYT8Q8NBV8 401 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 OR5P3Q8WZ94 311 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 A0A087WV48 116 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 A0A0G2JMM0 328 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 hCG_38984A0A1B0GV85 526 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 A0A1W2PPB8 328 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 KIR3DP1A8MWS1 328 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 PRR32B1ATL7 298 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 EREGO14944 169 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 HSD52Q0P140 79 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 ECSCRQ19T08 205 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 MIR17HGQ75NE6 70 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 ORMDL3Q8N138 153 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 FAM89BQ8N5H3 189 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 FMC1Q96HJ9 113 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 C16orf92Q96LL3 132 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 MS4A6AQ9H2W1 248 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 IGHV3-72A0A0B4J1Y9 119 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 A8MWP6 167 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 TMEM262E9PQX1 116 aa9.68□□□□□ -0.86
VPS39-201ENST00000318006 PAQR4Q8N4S7 273 aaPredicted RBP9.68□□□□□ -0.86
VPS39-201ENST00000318006 C17orf98A8MV24 154 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 PROB1E7EW31 1015 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 APOMO95445 188 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 MFAP4P55083 255 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 SRSF4Q08170 494 aaKnown RBP9.67□□□□□ -0.86
VPS39-201ENST00000318006 NRN1LQ496H8 165 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 OR4C13Q8NGP0 309 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 GPR82Q96P67 336 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 KIR2DL4Q99706 377 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms