RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 THYN1Q9P016 225 aa12.33□□□□□ -0.44
LSM1-201ENST00000311351 A8MWP6 167 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 CYB5BO43169 146 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 IGKV1-5P01602 117 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 DEFB114Q30KQ6 69 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 SPINK9Q5DT21 86 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 GTSCR1Q86UQ5 136 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 OR2K2Q8NGT1 345 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 OR4A16Q8NH70 328 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 TERB2Q8NHR7 220 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 VN1R17PQ8TDU5 208 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 TMEM56Q96MV1 263 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 C19orf73Q9NVV2 129 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 FKBP11Q9NYL4 201 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 COPZ2Q9P299 210 aa12.32□□□□□ -0.44
LSM1-201ENST00000311351 KMT2CQ8NEZ4 4911 aaKnown RBP12.32□□□□□ -0.44
LSM1-201ENST00000311351 C3orf85A0A1B0GTC6 90 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 OR2T8A6NH00 312 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 K7EIM0 57 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 TGOLN2O43493 480 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 S100A5P33763 92 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 AKR1C2P52895 323 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 SP6Q3SY56 376 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 FAM106AQ4KMX7 169 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 PLET1Q6UQ28 207 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 OR4C16Q8NGL9 310 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 ZFAND1Q8TCF1 268 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 WDR89Q96FK6 387 aaPredicted RBP12.31□□□□□ -0.44
LSM1-201ENST00000311351 RCHY1Q96PM5 261 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 NXF2Q9GZY0 626 aaKnown RBP12.31□□□□□ -0.44
LSM1-201ENST00000311351 RBM38Q9H0Z9 239 aaKnown RBP12.31□□□□□ -0.44
LSM1-201ENST00000311351 NDUFA13Q9P0J0 144 aa12.31□□□□□ -0.44
LSM1-201ENST00000311351 CTDSPLO15194 276 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 CTSDP07339 412 aaPredicted RBP12.3□□□□□ -0.44
LSM1-201ENST00000311351 P0C879 139 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 CBLN1P23435 193 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 PRCDQ00LT1 54 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 MEF2DQ14814 521 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 TM4SF20Q53R12 229 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 CCDC71LQ8N9Z2 235 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 UBAC2Q8NBM4 344 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 SCARB1Q8WTV0 552 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 WFDC10AQ9H1F0 79 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 PLEKHA3Q9HB20 300 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 C21orf62Q9NYP8 219 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 MLXQ9UH92 298 aa12.3□□□□□ -0.44
LSM1-201ENST00000311351 A0A0G2JRQ6 117 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 ZNF785A8K8V0 405 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 A8MZ25 164 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 F8W735 103 aaPredicted RBP12.29□□□□□ -0.44
LSM1-201ENST00000311351 CD7P09564 240 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 AKAIN1P0CW23 69 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 CD81P60033 236 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 GUCA2BQ16661 112 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 TRIM16LQ309B1 348 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 BTNL8Q6UX41 500 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 TMEM61Q8N0U2 210 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 OR2C3Q8N628 320 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 UXS1Q8NBZ7 420 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 OR1P1Q8NH06 330 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 MISP3Q96FF7 219 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 CHRDL1Q9BU40 450 aa12.29□□□□□ -0.44
LSM1-201ENST00000311351 FABP12A6NFH5 140 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 DISC1C4P0D8 188 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 UCP1P25874 307 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 TNFSF8P32971 234 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 HSPE1P61604 102 aaKnown RBP12.28□□□□□ -0.44
LSM1-201ENST00000311351 Q56UQ5 140 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 TMEM190Q8WZ59 177 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 BSCL2Q96G97 398 aaPredicted RBP12.28□□□□□ -0.44
LSM1-201ENST00000311351 NEURL2Q9BR09 285 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 RTBDNQ9BSG5 229 aaPredicted RBP12.28□□□□□ -0.44
LSM1-201ENST00000311351 ZNF436Q9C0F3 470 aaPredicted RBP12.28□□□□□ -0.44
LSM1-201ENST00000311351 C5orf66Q9H5L9 145 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 TECRQ9NZ01 308 aaKnown RBP12.28□□□□□ -0.44
LSM1-201ENST00000311351 C14orf166Q9Y224 244 aaKnown RBP12.28□□□□□ -0.44
LSM1-201ENST00000311351 DNAH7Q8WXX0 4024 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 NBEAL2Q6ZNJ1 2754 aa12.28□□□□□ -0.44
LSM1-201ENST00000311351 A0A0B4J293 547 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 ANKRD20A5PA0PJZ0 165 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 ST8SIA3O43173 380 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 GSTZ1O43708 216 aaPredicted RBP12.27□□□□□ -0.45
LSM1-201ENST00000311351 OR5AC1P0C628 307 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 ADMP35318 185 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 ZNF57Q68EA5 555 aaPredicted RBP12.27□□□□□ -0.45
LSM1-201ENST00000311351 ZNF114Q8NC26 417 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 OR51S1Q8NGJ8 323 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 OR1L6Q8NGR2 347 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 LHFPL5Q8TAF8 219 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 TM2D3Q9BRN9 247 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 TUBA4BQ9H853 241 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 SLC2A8Q9NY64 477 aa12.27□□□□□ -0.45
LSM1-201ENST00000311351 IGHV3OR16-8A0A075B7F1 116 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 I3L2K1 104 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 SCAF4O95104 1147 aaKnown RBP12.26□□□□□ -0.45
LSM1-201ENST00000311351 IGHV3-48P01763 117 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 DEFB125Q8N687 156 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 SLC35G3Q8N808 338 aa12.26□□□□□ -0.45
LSM1-201ENST00000311351 RNASE11Q8TAA1 199 aaKnown RBP12.26□□□□□ -0.45
LSM1-201ENST00000311351 PINX1Q96BK5 328 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms