RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SCAND1P57086 179 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 SPATA45Q537H7 98 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 Q5BKY6 102 aa6.5□□□□□ -1.37
SCN9A-201ENST00000303354 PIP4P2Q8N4L2 257 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 KIR2DL4Q99706 377 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 MRPS18AQ9NVS2 196 aaKnown RBP6.49□□□□□ -1.37
SCN9A-201ENST00000303354 TRBV5-5A0A0J9YX44 114 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 IQCF6A8MYZ5 107 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 SLC25A38Q96DW6 304 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 RSPO3Q9BXY4 272 aaPredicted RBP6.49□□□□□ -1.37
SCN9A-201ENST00000303354 NPIPB4C9JG80 1138 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM133Q9H2Q1 129 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 Q9H3A6 140 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 GCHFRP30047 84 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 PRSS33Q8NF86 280 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 GATAD1Q8WUU5 269 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM45BQ96B21 275 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 NUDT11Q96G61 164 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 IGLV2-23P01705 113 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 C7orf66A4D0T2 115 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 NTN3O00634 580 aaPredicted RBP6.49□□□□□ -1.37
SCN9A-201ENST00000303354 NRIP2Q9BQI9 281 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 EFNA4P52798 201 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 RTN4RL2Q86UN3 420 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF319Q9P2F9 582 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 IGHV3-16A0A0C4DH30 117 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 UQCC3Q6UW78 93 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 C19orf24Q9BVV8 132 aa6.49□□□□□ -1.37
SCN9A-201ENST00000303354 C5orf63A6NC05 138 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 NPIPB8E9PQR5 432 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 NPIPB9F8W1W9 429 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 NPIPB7O75200 414 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 TNFSF18Q9UNG2 199 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 TRGV1A0A0A0MS02 117 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 TRAV41A0A0B4J266 112 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 PAX8Q06710 450 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF474Q6S9Z5 364 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SYNJ2BPP57105 145 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 LRTM2Q8N967 370 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SDF2L1Q9HCN8 221 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 BCL2P10415 239 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 COX5BP10606 129 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 PMCHL1Q16048 86 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 REC114Q7Z4M0 266 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 OR52E5Q8NH55 327 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 WBP1Q96G27 269 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 OR9G9P0C7N8 305 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 IGHV2-26A0A0B4J1V2 119 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SMAGPQ0VAQ4 97 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 CIRBPQ14011 172 aaKnown RBP6.48□□□□□ -1.37
SCN9A-201ENST00000303354 IRF3Q14653 427 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 C9orf62Q8N4C0 152 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 KCNS1Q96KK3 526 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 RPUSD1Q9UJJ7 312 aaKnown RBP6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SCN4AP35499 1836 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 IGKV1D-13A0A0B4J2D9 117 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SOD3P08294 240 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 IGKV1-13P0DP09 117 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SCGB3A1Q96QR1 104 aa6.48□□□□□ -1.37
SCN9A-201ENST00000303354 SSBP4Q9BWG4 385 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-201ENST00000303354 TRBV7-9A0A0J9YWB2 115 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 KNCNA6PVL3 124 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 ADARB2-AS1A8MUL3 147 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 LEPROTL1O95214 131 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 IGHMP01871 453 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 TRGC1P0CF51 173 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 MORN2Q502X0 79 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 C10orf128Q5T292 105 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF324BQ6AW86 544 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-201ENST00000303354 MSRB2Q9Y3D2 182 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 TMEM70Q9BUB7 260 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 C19orf67A6NJJ6 358 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 APOMO95445 188 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 HOXA6P31267 233 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 HMSDA8MTL9 139 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 E7EQL1 145 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 TDGF1P3P51864 188 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 IGLV3-21P80748 117 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-201ENST00000303354 C21orf62-AS1Q17RA5 79 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF506Q5JVG8 444 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 RNASE7Q9H1E1 156 aaKnown RBP6.47□□□□□ -1.37
SCN9A-201ENST00000303354 CXorf65A6NEN9 183 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 EFNA2O43921 213 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 IGHV4-39P01824 125 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 HIST2H2BCQ6DN03 193 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 NUDT10Q8NFP7 164 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 C1QTNF5Q9BXJ0 243 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 MRPL13Q9BYD1 178 aaKnown RBP6.47□□□□□ -1.37
SCN9A-201ENST00000303354 LINC00312Q9Y6C7 94 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 NPIPB13A6NJU9 1138 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 NPIPB5A8MRT5 1133 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 APOHP02749 345 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-201ENST00000303354 CBLN1P23435 193 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 LINC01356Q8N9X3 169 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 ZNF581Q9P0T4 197 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 CGB7P0DN87 165 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 RCHY1Q96PM5 261 aa6.47□□□□□ -1.37
SCN9A-201ENST00000303354 LYRM2Q9NU23 88 aaPredicted RBP6.47□□□□□ -1.37
SCN9A-201ENST00000303354 TRBV5-7A0A0A0MS05 114 aa6.46□□□□□ -1.37
SCN9A-201ENST00000303354 K7EM74 188 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms