RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 HIST1H2BBP33778 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST1H2BDP58876 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST1H2BCP62807 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST2H2BEQ16778 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST1H2BHQ93079 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST1H2BNQ99877 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 HIST1H2BMQ99879 126 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 OPN3Q9H1Y3 402 aaPredicted RBP6.48□□□□□ -1.37
SF3B3-201ENST00000302516 MS4A6AQ9H2W1 248 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 NRN1Q9NPD7 142 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 RNF115Q9Y4L5 304 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 LTBP1Q14766 1721 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 CCL1P22362 96 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 SUMO2P61956 95 aaKnown RBP6.48□□□□□ -1.37
SF3B3-201ENST00000302516 CCL8P80075 99 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 NRTNQ99748 197 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 SRXN1Q9BYN0 137 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 TMEM106BQ9NUM4 274 aa6.48□□□□□ -1.37
SF3B3-201ENST00000302516 GFRA1P56159 465 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 PRSS53Q2L4Q9 553 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 GCSAMLQ5JQS6 135 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 LINC00114Q6XXX2 140 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 OR9G4Q8NGQ1 327 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 ZNF257Q9Y2Q1 563 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 CACNA1GO43497 2377 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 A0A0G2JLM5 398 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 NBEAP1P0C6P0 100 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 LINC00271P0C7V0 271 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 BTCP35070 178 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 CCL20P78556 96 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 PMS2CLQ68D20 193 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 HILPDAQ9Y5L2 63 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 SCO2A0A1W2PP80 73 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 ACSF3Q4G176 576 aaPredicted RBP6.47□□□□□ -1.37
SF3B3-201ENST00000302516 ABHD12Q8N2K0 398 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 PNKDQ8N490 385 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 WNT10AQ9GZT5 417 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 MRPS18CQ9Y3D5 142 aaKnown RBP6.47□□□□□ -1.37
SF3B3-201ENST00000302516 PPIAL4CA0A0B4J2A2 164 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 PPIAL4GP0DN37 164 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 ORMDL2Q53FV1 153 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 TIMM23BQ5SRD1 257 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 TEX45Q8NA69 505 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 NUP210Q8TEM1 1887 aaPredicted RBP6.47□□□□□ -1.37
SF3B3-201ENST00000302516 OR2K2Q8NGT1 345 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 PLPPR1Q8TBJ4 325 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 CCL21O00585 134 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 KIAA1549LQ6ZVL6 1849 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 LOC105371242A0A075B767 164 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 LEPP41159 167 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 TMEM170BQ5T4T1 132 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 WDR82Q6UXN9 313 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 FOXC2Q99958 501 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 TMEM74BQ9NUR3 256 aa6.47□□□□□ -1.37
SF3B3-201ENST00000302516 TRAV14DV4A0A0A6YYC5 116 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 FOXI3A8MTJ6 420 aaPredicted RBP6.46□□□□□ -1.37
SF3B3-201ENST00000302516 TFF3Q07654 80 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 HSD52Q0P140 79 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 PVRIGQ6DKI7 326 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 HEPN1Q6WQI6 88 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 OR52E5Q8NH55 327 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 AKIRIN1Q9H9L7 192 aaPredicted RBP6.46□□□□□ -1.37
SF3B3-201ENST00000302516 TNFRSF18Q9Y5U5 241 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 SERF1AO75920 110 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 FBLN7Q53RD9 439 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 ZNF525Q8N782 197 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 DENND4AQ7Z401 1863 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 DPM2O94777 84 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 HBDP02042 147 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 KIAA1644Q3SXP7 199 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 NUDT10Q8NFP7 164 aa6.46□□□□□ -1.37
SF3B3-201ENST00000302516 TRAV8-6A0A0B4J262 113 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 RAMP1O60894 148 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 LINC00614P0C842 121 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 FER1L6-AS1Q8NA97 138 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 DUX5Q96PT3 197 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 SLC50A1Q9BRV3 221 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 LINC00312Q9Y6C7 94 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 TICRRQ7Z2Z1 1910 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 KBTBD11-OT1A0A1B0GTJ5 212 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 CGAP01215 116 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 EGR4Q05215 589 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 WFDC3Q8IUB2 231 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 SIGMAR1Q99720 223 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 OVOL2Q9BRP0 275 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 Q9H3A6 140 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 KIF26AQ9ULI4 1882 aaPredicted RBP6.46□□□□□ -1.38
SF3B3-201ENST00000302516 ZNF362Q5T0B9 420 aaPredicted RBP6.46□□□□□ -1.38
SF3B3-201ENST00000302516 VKORC1L1Q8N0U8 176 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 C14orf144Q96I85 54 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 AGMATQ9BSE5 352 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 FAM181BA6NEQ2 426 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 C15orf61A6NNL5 157 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 F2Z2F3 143 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 FTH1P19P0C7X4 201 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 FAM57AQ8TBR7 257 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 WFDC6Q9BQY6 131 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 A0A1W2PRE2 83 aa6.46□□□□□ -1.38
SF3B3-201ENST00000302516 C4orf51C9J302 202 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 246.4 ms