RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 HERV-K104P61576 105 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 SFXN4Q6P4A7 337 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 GVQW1Q8N7I0 195 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 OR1P1Q8NH06 330 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 DGCR14Q96DF8 476 aaKnown RBP10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 TXN2Q99757 166 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 VCX3BQ9H321 246 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 PRNDQ9UKY0 176 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 OR51B2Q9Y5P1 312 aa10.83□□□□□ -0.68
CCDC88B-201ENST00000301897 DNAH6Q9C0G6 4158 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 TRAV18A0A075B6X5 111 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 IGHV3-21A0A0B4J1V1 117 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 DFFBO76075 338 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 YIF1AO95070 293 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 ATP6V1G2O95670 118 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 CA1P00915 261 aaPredicted RBP10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 EIF4EP06730 217 aaKnown RBP10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 PTHLHP12272 177 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 F2RP25116 425 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 MFAP2P55001 183 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 TMEM187Q14656 261 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 UBE2UQ5VVX9 321 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 LINC00336Q6ZUF6 198 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 TMEM17Q86X19 198 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 OR5AP2Q8NGF4 316 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 CNBD2Q96M20 576 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 TSC22D3Q99576 134 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 GINS3Q9BRX5 216 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 HRH4Q9H3N8 390 aa10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 RRP15Q9Y3B9 282 aaKnown RBP10.82□□□□□ -0.68
CCDC88B-201ENST00000301897 TRAV14DV4A0A0A6YYC5 116 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 TFPI2P48307 235 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 MFAP4P55083 255 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 PRR20EP86478 221 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 PRR20CP86479 221 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 PRR20DP86480 221 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 PRR20BP86481 221 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 PRR20AP86496 221 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 TMEM41BQ5BJD5 291 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 IZUMO2Q6UXV1 221 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 CMTM1Q8IZ96 169 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 CENPSQ8N2Z9 138 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 TSPAN14Q8NG11 270 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 DIABLOQ9NR28 239 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 SSR3Q9UNL2 185 aa10.81□□□□□ -0.68
CCDC88B-201ENST00000301897 VPS13DQ5THJ4 4388 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 TRAV2A0A0B4J234 112 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 C15orf61A6NNL5 157 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 IGLL5B9A064 214 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 KRASP01116 189 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 GNRHRP30968 328 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 GABARAPL2P60520 117 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 ZNF124Q15973 351 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 FAM90A2PQ658T7 463 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 NXF2Q9GZY0 626 aaKnown RBP10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 AUNIPQ9H7T9 357 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 TMEM14BQ9NUH8 114 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 RAB26Q9ULW5 256 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 APLNQ9ULZ1 77 aa10.8□□□□□ -0.68
CCDC88B-201ENST00000301897 IGKV3-7A0A075B6H7 116 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 DNASE2O00115 360 aaPredicted RBP10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 RLN1P04808 185 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 SDC2P34741 201 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 TCF24Q7RTU0 167 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 SPARTQ8N0X7 666 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 DUSP18Q8NEJ0 188 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 OR5H6Q8NGV6 325 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 FCGR1BQ92637 280 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 SLC25A38Q96DW6 304 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 IFT46Q9NQC8 304 aa10.79□□□□□ -0.68
CCDC88B-201ENST00000301897 KIAA1109Q2LD37 5005 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 GNG7O60262 68 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 TMEM127O75204 238 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 PGLYRP1O75594 196 aaPredicted RBP10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 PSMB9P28065 219 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 S100GP29377 79 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 LPAR6P43657 344 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 DHRS11Q6UWP2 260 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 STHQ8IWL8 128 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 GBGT1Q8N5D6 347 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 FCAMRQ8WWV6 532 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 SLC25A46Q96AG3 418 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 MISP3Q96FF7 219 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 TMEM231Q9H6L2 316 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 FAM212BQ9NTI7 297 aaPredicted RBP10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 EHFQ9NZC4 300 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 NSG2Q9Y328 171 aa10.78□□□□□ -0.68
CCDC88B-201ENST00000301897 IGHV3-49A0A0A0MS15 119 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 I3L2K1 104 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 DEFB4AO15263 64 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 ST8SIA3O43173 380 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 CLEC2LP0C7M8 214 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 MIFP14174 115 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 G6PCP35575 357 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 Q8NAQ8 132 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 ZNF114Q8NC26 417 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 MOB3AQ96BX8 217 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 MS4A6AQ9H2W1 248 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 VSIRQ9H7M9 311 aa10.77□□□□□ -0.69
CCDC88B-201ENST00000301897 RYR1P21817 5038 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms