RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RAB31Q13636 194 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 FBXL19-AS1Q494R0 122 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 WDR25Q64LD2 544 aaPredicted RBP9.3□□□□□ -0.92
CUX1-202ENST00000292538 FAM90A2PQ658T7 463 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 OSR1Q8TAX0 266 aaPredicted RBP9.3□□□□□ -0.92
CUX1-202ENST00000292538 CBLN4Q9NTU7 201 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 KAAG1Q9UBP8 84 aa9.3□□□□□ -0.92
CUX1-202ENST00000292538 A0A1B0GW64 132 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 C22orf46C9J442 243 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 ATP5G3P48201 142 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 RHEBQ15382 184 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 FAM78BQ5VT40 261 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 ZNF841Q6ZN19 808 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 OR4P4Q8NGL7 312 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 RAB1CQ92928 201 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 MISP3Q96FF7 219 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 UTP20O75691 2785 aaKnown RBP9.29□□□□□ -0.92
CUX1-202ENST00000292538 CELSR1Q9NYQ6 3014 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 IGHV2-70P01814 119 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 MDKP21741 143 aaPredicted RBP9.29□□□□□ -0.92
CUX1-202ENST00000292538 OR10J1P30954 320 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 PRRX1P54821 245 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 DLX6P56179 175 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 CTAG1AP78358 180 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 HES1Q14469 280 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 OR1L8Q8NGR8 309 aa9.29□□□□□ -0.92
CUX1-202ENST00000292538 C19orf84I3L1E1 186 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 S100A6P06703 90 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 IL3RAP26951 378 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 VWC2Q2TAL6 325 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 Q8N7P7 452 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 CLEC7AQ9BXN2 247 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 PARD6GQ9BYG4 376 aaPredicted RBP9.28□□□□□ -0.92
CUX1-202ENST00000292538 SMDT1Q9H4I9 107 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 FKBP11Q9NYL4 201 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 IGSF10Q6WRI0 2623 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 TGIF2-C20orf24A0A0A6YYL0 155 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 C1orf196B1AJZ1 125 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 OR10J4P0C629 311 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 GAMTQ14353 236 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 VMA21Q3ZAQ7 101 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 C15orf54Q8N8G6 183 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 NEIL1Q96FI4 390 aaPredicted RBP9.28□□□□□ -0.92
CUX1-202ENST00000292538 C1orf159Q96HA4 380 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 DERL1Q9BUN8 251 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 FBXL15Q9H469 300 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 PRORYQ9H606 182 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 BET1LQ9NYM9 111 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 PGPEP1LA6NFU8 196 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 PRSS46E5RG02 174 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 RAB5AP20339 215 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 RAB13P51153 203 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 SNRPEP62304 92 aaKnown RBP9.28□□□□□ -0.92
CUX1-202ENST00000292538 SSBP2P81877 361 aaPredicted RBP9.28□□□□□ -0.92
CUX1-202ENST00000292538 WT1-ASQ06250 92 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 TMEM30BQ3MIR4 351 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 OR5B3Q8NH48 314 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 SSX3Q99909 188 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 PARLQ9H300 379 aa9.28□□□□□ -0.92
CUX1-202ENST00000292538 IGKV1OR2-108A0A075B7D4 117 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 BUB1B-PAK6H3BSN5 160 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 MT-ND4LP03901 98 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 LCN2P80188 198 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 HLA-DRB5Q30154 266 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 AARDQ4LEZ3 155 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 SP5Q6BEB4 398 aaPredicted RBP9.27□□□□□ -0.93
CUX1-202ENST00000292538 CENPVQ7Z7K6 275 aaPredicted RBP9.27□□□□□ -0.93
CUX1-202ENST00000292538 PDPNQ86YL7 162 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 LINC00469Q8N7U9 141 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 ST6GALNAC6Q969X2 333 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 TRBV23-1A0A0A0MS06 115 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 PCP4L1A6NKN8 68 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 OR7C2O60412 319 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 NDUFB4O95168 129 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 RNASE2P10153 161 aaKnown RBP9.27□□□□□ -0.93
CUX1-202ENST00000292538 USF1P22415 310 aaPredicted RBP9.27□□□□□ -0.93
CUX1-202ENST00000292538 RAB5BP61020 215 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 SSX2Q16385 188 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 RNF212Q495C1 297 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 MIR17HGQ75NE6 70 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 NPIPB3Q92617 1050 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 PCGF1Q9BSM1 259 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 METTL1Q9UBP6 276 aaKnown RBP9.27□□□□□ -0.93
CUX1-202ENST00000292538 MIOXQ9UGB7 285 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 EPG5Q9HCE0 2579 aa9.27□□□□□ -0.93
CUX1-202ENST00000292538 CSMD2Q7Z408 3487 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 LOC105371242A0A075B767 164 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 IGHV1-3A0A0C4DH29 117 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 A0A0U1RQK1 487 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 CNIH1O95406 144 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 LIPFP07098 398 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 AREGP15514 252 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 FLI1Q01543 452 aaPredicted RBP9.26□□□□□ -0.93
CUX1-202ENST00000292538 TMEM241Q24JQ0 296 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 C4orf17Q53FE4 359 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 TMEM177Q53S58 311 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 SPNS3Q6ZMD2 512 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 VSTM2AQ8TAG5 236 aa9.26□□□□□ -0.93
CUX1-202ENST00000292538 SSBP3Q9BWW4 388 aaPredicted RBP9.26□□□□□ -0.93
CUX1-202ENST00000292538 NDUFA4L2Q9NRX3 87 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms