RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TREML4Q6UXN2 200 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 RARRES2Q99969 163 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 VWC2LB2RUY7 222 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 H2AFB1P0C5Y9 115 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 GATA2P23769 480 aaPredicted RBP13.19□□□□□ -0.3
USP4-201ENST00000265560 ZNF726P1Q15940 193 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 FKBP11Q9NYL4 201 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 CENPVL3A0A0U1RRI6 287 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 SH2D7A6NKC9 451 aaPredicted RBP13.19□□□□□ -0.3
USP4-201ENST00000265560 RNASE2P10153 161 aaKnown RBP13.19□□□□□ -0.3
USP4-201ENST00000265560 RPP30P78346 268 aaKnown RBP13.19□□□□□ -0.3
USP4-201ENST00000265560 C1orf122Q6ZSJ8 110 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 OR2T6Q8NHC8 308 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 C1orf159Q96HA4 380 aa13.19□□□□□ -0.3
USP4-201ENST00000265560 MYO9AB2RTY4 2548 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 TRAV40A0A0B4J280 105 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 CNIH1O95406 144 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 SSBP2P81877 361 aaPredicted RBP13.18□□□□□ -0.3
USP4-201ENST00000265560 EIF5A2Q9GZV4 153 aaKnown RBP13.18□□□□□ -0.3
USP4-201ENST00000265560 SLC25A22Q9H936 323 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 MTORP42345 2549 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 HAGHQ16775 308 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 FFAR4Q5NUL3 377 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 MIC13Q5XKP0 118 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 C22orf15Q8WYQ4 148 aa13.18□□□□□ -0.3
USP4-201ENST00000265560 J3QKU1 62 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 IGHV4-38-2P0DP08 117 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 RPP25LQ8N5L8 163 aaKnown RBP13.17□□□□□ -0.3
USP4-201ENST00000265560 ACY3Q96HD9 319 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 ERHP84090 104 aaKnown RBP13.17□□□□□ -0.3
USP4-201ENST00000265560 SPSB3Q6PJ21 355 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 ZNF709Q8N972 641 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 MARVELD3Q96A59 401 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 AJUBAQ96IF1 538 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 MGST2Q99735 147 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 UNKLQ9H9P5 680 aaKnown RBP13.17□□□□□ -0.3
USP4-201ENST00000265560 SOX15O60248 233 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 GOSR1O95249 250 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 CRYGBP07316 175 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 FBP1P09467 338 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 RPL27AP46776 148 aaKnown RBP13.17□□□□□ -0.3
USP4-201ENST00000265560 IQCF2Q8IXL9 164 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 KIR3DL3Q8N743 410 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 RCC1LQ96I51 464 aaKnown RBP13.17□□□□□ -0.3
USP4-201ENST00000265560 P2RX4Q99571 388 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 C7orf69Q9H7B7 122 aa13.17□□□□□ -0.3
USP4-201ENST00000265560 UMAD1C9J7I0 102 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 RNF223E7ERA6 249 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 AVPP01185 164 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 UBE2E1P51965 193 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 CEBPGP53567 150 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 DEFA5Q01523 94 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 ATP6V1FQ16864 119 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.16□□□□□ -0.3
USP4-201ENST00000265560 TEX45Q8NA69 505 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 TMPRSS5Q9H3S3 457 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 HIF1ANQ9NWT6 349 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 SETD2Q9BYW2 2564 aaPredicted RBP13.16□□□□□ -0.3
USP4-201ENST00000265560 IGKV1OR2-108A0A075B7D4 117 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 MOSP00540 346 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 ADCYAP1P18509 176 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 MMD2Q8IY49 270 aa13.16□□□□□ -0.3
USP4-201ENST00000265560 MRPL36Q9P0J6 103 aaKnown RBP13.16□□□□□ -0.3
USP4-201ENST00000265560 PPT1P50897 306 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 RAB5CP51148 216 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 KLF17Q5JT82 389 aaPredicted RBP13.15□□□□□ -0.3
USP4-201ENST00000265560 FAM122CQ6P4D5 195 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 MISP3Q96FF7 219 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 FNDC4Q9H6D8 234 aaPredicted RBP13.15□□□□□ -0.3
USP4-201ENST00000265560 WDR83OSQ9Y284 106 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 PDZD2O15018 2839 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 IGLC7A0M8Q6 106 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 TRIM77I1YAP6 450 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 NDUFS8O00217 210 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 OPRK1P41145 380 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 MFAP2P55001 183 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 ABHD5Q8WTS1 349 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 SRSF12Q8WXF0 261 aaKnown RBP13.15□□□□□ -0.3
USP4-201ENST00000265560 NF1P21359 2839 aa13.15□□□□□ -0.3
USP4-201ENST00000265560 NPFFO15130 113 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 NBR2O15453 112 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 COMPP49747 757 aaPredicted RBP13.15□□□□□ -0.31
USP4-201ENST00000265560 GAMTQ14353 236 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 ATRAIDQ6UW56 229 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 TMEM219Q86XT9 240 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 LYPD6BQ8NI32 183 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 FAM210AQ96ND0 272 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 S4R3C0 116 aa13.15□□□□□ -0.31
USP4-201ENST00000265560 PAX8Q06710 450 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 GUK1Q16774 197 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 VWC2Q2TAL6 325 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 EIF4E3Q8N5X7 224 aaKnown RBP13.14□□□□□ -0.31
USP4-201ENST00000265560 OR10G4Q8NGN3 311 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 OR10G9Q8NGN4 311 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 OR10G7Q8NGN6 311 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 MSMBP08118 114 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 M6PRP20645 277 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 OR4A5Q8NH83 315 aa13.14□□□□□ -0.31
USP4-201ENST00000265560 GSX1Q9H4S2 264 aaPredicted RBP13.14□□□□□ -0.31
USP4-201ENST00000265560 TMEM218A2RU14 115 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms