RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TECTAO75443 2155 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 ZNF891A8MT65 544 aaPredicted RBP11.86□□□□□ -0.51
SDC1-201ENST00000254351 AMY1AP04745 511 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 MOB1BQ7L9L4 216 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 COQ2Q96H96 371 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 C1orf159Q96HA4 380 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 GPR179Q6PRD1 2367 aa11.86□□□□□ -0.51
SDC1-201ENST00000254351 LAMA5O15230 3695 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 ZDBF2Q9HCK1 2354 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 TET2Q6N021 2002 aaPredicted RBP11.85□□□□□ -0.51
SDC1-201ENST00000254351 IGHV2-70DA0A0C4DH43 119 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 EPHA8P29322 1005 aaPredicted RBP11.85□□□□□ -0.51
SDC1-201ENST00000254351 AARDQ4LEZ3 155 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 TEPPQ6URK8 271 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 MBNL3Q9NUK0 354 aaKnown RBP11.85□□□□□ -0.51
SDC1-201ENST00000254351 TRAV9-2A0A087WT02 112 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 A0A087X0K7 114 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 GGTLC3B5MD39 225 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 GFRA3O60609 400 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 PROP1O75360 226 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 NPY1RP25929 384 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 CYB561P49447 251 aa11.85□□□□□ -0.51
SDC1-201ENST00000254351 IGLC7A0M8Q6 106 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 NPIPB11E5RHQ5 1161 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 LAMTOR5O43504 91 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 CSN3P07498 182 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 FOLR3P41439 243 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 UQCRFS1P47985 274 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 GDF5OSQ5U4N7 250 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 WDR73Q6P4I2 378 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 SSX8Q7RTT4 187 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 LINC00596Q86U02 117 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 SPACA3Q8IXA5 215 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 OR4F17Q8NGA8 305 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 RAB1CQ92928 201 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 TAAR6Q96RI8 345 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 NPVFQ9HCQ7 196 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 LOXL2Q9Y4K0 774 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 KALRNO60229 2985 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 PLXNB1O43157 2135 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 IGHV2-26A0A0B4J1V2 119 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 M0R296 226 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 SAP30O75446 220 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 FABP6P51161 128 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 UBE2G1P62253 170 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 OR10J3Q5JRS4 329 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 TMEM140Q9NV12 185 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 TRGV10A0A0A0MS01 117 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 OR4C46A6NHA9 309 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 H3BTX0 84 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 MT-CO2P00403 227 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 CFIP05156 583 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 ERVK-16P61578 105 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 OR1C1Q15619 314 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 GABRA6Q16445 453 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 OCIAD2Q56VL3 154 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 MORN5Q5VZ52 161 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 SLC25A40Q8TBP6 338 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 SH2D2AQ9NP31 389 aa11.84□□□□□ -0.51
SDC1-201ENST00000254351 CSMD1Q96PZ7 3565 aa11.83□□□□□ -0.51
SDC1-201ENST00000254351 CACNA1GO43497 2377 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 LYZL6O75951 148 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 RPL19P84098 196 aaKnown RBP11.83□□□□□ -0.52
SDC1-201ENST00000254351 FOXE3Q13461 319 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 C1orf210Q8IVY1 113 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 TMEM45BQ96B21 275 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 IL19Q9UHD0 177 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 TCF19Q9Y242 345 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 POLDIP2Q9Y2S7 368 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 OOEPA6NGQ2 149 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 TOX4O94842 621 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 SSPNQ14714 243 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 NABP2Q9BQ15 211 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 CEP192Q8TEP8 1941 aa11.83□□□□□ -0.52
SDC1-201ENST00000254351 IGHV3OR15-7A0A075B7D8 119 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 GOSR1O95249 250 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 TOMM40O96008 361 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 PYYP10082 97 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 MPV17P39210 176 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 MED13Q9UHV7 2174 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 IGHV1-69-2A0A0G2JMI3 117 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 K7EP13 123 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 AGFG2O95081 481 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 HLA-DQA1P01909 254 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 BPIFB3P59826 476 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 FAM214BQ7L5A3 538 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 TCF24Q7RTU0 167 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 PKIBQ9C010 78 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 WDR54Q9H977 334 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 TNFRSF19Q9NS68 423 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 YLPM1P49750 1951 aaKnown RBP11.82□□□□□ -0.52
SDC1-201ENST00000254351 ATMQ13315 3056 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 ARR3P36575 388 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 PPOXP50336 477 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 GNG5P63218 68 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 PLGLB1Q02325 96 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 TMEM105Q8N8V8 129 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 OR9G1Q8NH87 305 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 ENY2Q9NPA8 101 aa11.82□□□□□ -0.52
SDC1-201ENST00000254351 MRPS16Q9Y3D3 137 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms