RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 WNT5AP41221 380 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 PLEKHB2Q96CS7 222 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 F11RQ9Y624 299 aaKnown RBP3.96□□□□□ -1.78
SCN1A-220ENST00000641603 CBLN3Q6UW01 205 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 C17orf99Q6UX52 265 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF721Q8TF20 911 aa3.96□□□□□ -1.78
SCN1A-220ENST00000641603 SRSF12Q8WXF0 261 aaKnown RBP3.96□□□□□ -1.78
SCN1A-220ENST00000641603 TRAV2A0A0B4J234 112 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 SPTY2D1-AS1A0A0U1RR47 76 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CFIP05156 583 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CDAP32320 146 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 TDHQ8IZJ6 230 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 HARBI1Q96MB7 349 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF355PQ9NSJ1 428 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 URB1O60287 2271 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 GCSAMLQ5JQS6 135 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 LRRC29Q8WV35 223 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RBBP6Q7Z6E9 1792 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 FAM157AC9JC47 383 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 NKX2-8O15522 239 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 PLAUP00749 431 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CXCL12P48061 93 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 FAM78AQ5JUQ0 283 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CHAC1Q9BUX1 264 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 DLL3Q9NYJ7 618 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 LHFPL6Q9Y693 200 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 TRBV20OR9-2A0A075B6H5 130 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 IGLC7A0M8Q6 106 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 IGHG4P01861 327 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 KIAA1644Q3SXP7 199 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 ZPLD1Q8TCW7 415 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 MS4A4AQ96JQ5 239 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 F5H697 171 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 C1QCP02747 245 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 LGALS1P09382 135 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 KLRB1Q12918 225 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 KLRD1Q13241 179 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 FAM19A2Q8N3H0 131 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 ERG28Q9UKR5 140 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 APC2O95996 2303 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 SEC16AO15027 2179 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 PGPA6NDG6 321 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 ZG16O60844 167 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 FAM53AQ6NSI3 398 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM108Q6UXF1 575 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 VGLL1Q99990 258 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 TRAV8-6A0A0B4J262 113 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RPL27AP46776 148 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 PVRIGQ6DKI7 326 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 IFI27L2Q9H2X8 130 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 ARFGEF1Q9Y6D6 1849 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CCL25O15444 150 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CXCL10P02778 98 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 FXYD3Q14802 87 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 DEFB133Q30KQ1 61 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 DMRTC1Q5HYR2 192 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 BVES-AS1Q5T3Y7 98 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 CNEP1R1Q8N9A8 125 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 H1FXQ92522 213 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 HIGD1BQ9P298 99 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RNF7Q9UBF6 113 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 MMP17Q9ULZ9 603 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 NDUFC2O95298 119 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 NMSQ5H8A3 153 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 PRNTQ86SH4 94 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 DICER1Q9UPY3 1922 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 SHROOM3Q8TF72 1996 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 A0A1W2PS18 150 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RBMY1BA6NDE4 496 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RBMY1EA6NEQ0 496 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 H3BMG7 143 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RBMY1DP0C7P1 496 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RBMY1A1P0DJD3 496 aaKnown RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 RBMY1CP0DJD4 496 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 GUSBP1Q15486 140 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 SPSB3Q6PJ21 355 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 PPP1R27Q86WC6 154 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 C18orf32Q8TCD1 76 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 SCGB3A1Q96QR1 104 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 AURKAIP1Q9NWT8 199 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-220ENST00000641603 EPDR1Q9UM22 224 aa3.95□□□□□ -1.78
SCN1A-220ENST00000641603 TM4SF5O14894 197 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 KLF5Q13887 457 aaPredicted RBP3.94□□□□□ -1.78
SCN1A-220ENST00000641603 FOXC2Q99958 501 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 IGKV1D-42A0A075B6H8 117 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 NBEAP1P0C6P0 100 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 METTL12A8MUP2 240 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 PROB1E7EW31 1015 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 CT62P0C5K7 136 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 SMIM10L1P0DMW3 83 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 SMIM10Q96HG1 83 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF488Q96MN9 340 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 PAX1P15863 534 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 GNB1P62873 340 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 OR4C13Q8NGP0 309 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 PILRAQ9UKJ1 303 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 TRPM7Q96QT4 1865 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 ZNF841Q6ZN19 808 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 TMEM54Q969K7 222 aa3.94□□□□□ -1.78
SCN1A-220ENST00000641603 AMELYQ99218 206 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms