RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TEX22C9J3V5 150 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 CDS2O95674 445 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 IGKV1-5P01602 117 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 VAMP1P23763 118 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 BTCP35070 178 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 CDX1P47902 265 aaPredicted RBP14.08□□□□□ -0.16
CLN3-243ENST00000635973 TMEM268Q5VZI3 342 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 MRPL41Q8IXM3 137 aaKnown RBP14.08□□□□□ -0.16
CLN3-243ENST00000635973 LINC00482Q8N8I6 264 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 PRR13Q9NZ81 148 aa14.08□□□□□ -0.16
CLN3-243ENST00000635973 E7EUB6 86 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 PLA2G10O15496 165 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 TRAPPC2P0DI81 140 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 TRAPPC2BP0DI82 140 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 MYCNOSP40205 109 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 MECP2P51608 486 aaKnown RBP14.07□□□□□ -0.16
CLN3-243ENST00000635973 SRPXP78539 464 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 TMEM187Q14656 261 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 IZUMO4Q1ZYL8 232 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 THOC7Q6I9Y2 204 aaKnown RBP14.07□□□□□ -0.16
CLN3-243ENST00000635973 ZNF491Q8N8L2 437 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 OR5B3Q8NH48 314 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 LHFPL5Q8TAF8 219 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 MYOZ3Q8TDC0 251 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 C4orf3Q8WVX3 66 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 UBE2E2Q96LR5 201 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 OR5B12Q96R08 314 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 GNB4Q9HAV0 340 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 TMEM14BQ9NUH8 114 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 ZNF257Q9Y2Q1 563 aa14.07□□□□□ -0.16
CLN3-243ENST00000635973 TEX50A0A1B0GTY4 177 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 C13orf42A0A1B0GVH6 325 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 A0A1B0GW64 132 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 NPIPB5A8MRT5 1133 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 UPK1BO75841 260 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 DHFRP00374 187 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 REG1AP05451 166 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 AREGP15514 252 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 HOXD3P31249 432 aaPredicted RBP14.06□□□□□ -0.16
CLN3-243ENST00000635973 RAB25P57735 213 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 SUPT4H1P63272 117 aaKnown RBP14.06□□□□□ -0.16
CLN3-243ENST00000635973 MZT2BQ6NZ67 158 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 FAM219AQ8IW50 185 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 SELENOHQ8IZQ5 122 aaKnown RBP14.06□□□□□ -0.16
CLN3-243ENST00000635973 LGI3Q8N145 548 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 TTC9CQ8N5M4 171 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 IL22RA2Q969J5 263 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 TMEM56Q96MV1 263 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 SRSF8Q9BRL6 282 aaKnown RBP14.06□□□□□ -0.16
CLN3-243ENST00000635973 PDCD10Q9BUL8 212 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 FLVCR2Q9UPI3 526 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 TMEM56-RWDD3S4R434 201 aa14.06□□□□□ -0.16
CLN3-243ENST00000635973 PIGBOS1A0A0B4J2F0 54 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 CGB1A6NKQ9 187 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 IGHV3-11P01762 117 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 PRH1P02810 166 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 DEFA4P12838 97 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 PSMB6P28072 239 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 DEFA5Q01523 94 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 PPP1R1AQ13522 171 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 DEFB136Q30KP8 78 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 HSD17B13Q7Z5P4 300 aaPredicted RBP14.05□□□□□ -0.16
CLN3-243ENST00000635973 SLC35G3Q8N808 338 aa14.05□□□□□ -0.16
CLN3-243ENST00000635973 LSM10Q969L4 123 aaKnown RBP14.05□□□□□ -0.16
CLN3-243ENST00000635973 ZMAT5Q9UDW3 170 aaKnown RBP14.05□□□□□ -0.16
CLN3-243ENST00000635973 A0A0G2JLM5 398 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 IGLC7A0M8Q6 106 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 DBX1A6NMT0 343 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 K7EIL1 84 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 UBE2MP61081 183 aaKnown RBP14.04□□□□□ -0.16
CLN3-243ENST00000635973 KIAA0141Q14154 515 aaPredicted RBP14.04□□□□□ -0.16
CLN3-243ENST00000635973 ETV3LQ6ZN32 361 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 OR10W1Q8NGF6 305 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 DUX3Q96PT4 197 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 C20orf85Q9H1P6 137 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 NDUFA4L2Q9NRX3 87 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 TBC1D24Q9ULP9 559 aa14.04□□□□□ -0.16
CLN3-243ENST00000635973 A0A0G2JRQ6 117 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 FAM240BA0A1B0GVZ2 78 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 CCL24O00175 119 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 SFT2D2O95562 160 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 IFNA17P01571 189 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 HLA-AP01891 365 aaKnown RBP14.03□□□□□ -0.16
CLN3-243ENST00000635973 LGALS1P09382 135 aaKnown RBP14.03□□□□□ -0.16
CLN3-243ENST00000635973 P0C879 139 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 OR13C7P0DN81 318 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 ANXA7P20073 488 aaKnown RBP14.03□□□□□ -0.16
CLN3-243ENST00000635973 KRTAP10-11P60412 298 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 RHOGP84095 191 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 ASAH1Q13510 395 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 C4orf46Q504U0 113 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 C19orf35Q6ZS72 473 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 USMG5Q96IX5 58 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 PLEKHA3Q9HB20 300 aa14.03□□□□□ -0.16
CLN3-243ENST00000635973 TRAV6A0A075B6T7 132 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 A0A0B4J293 547 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 A0A0B4J2A0 478 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 WI2-2373I1.2A0A1W2PRP0 233 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 FAM223BA6NKX1 122 aa14.02□□□□□ -0.17
CLN3-243ENST00000635973 CYB5BO43169 146 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms