RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ZNF585BQ52M93 769 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 ACSM6Q6P461 480 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 Q6ZS92 163 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 ERASQ7Z444 233 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 BAGE3Q86Y29 109 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 BAGE2Q86Y30 109 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM216BQ8N7L0 139 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 NEUROG1Q92886 237 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 RYDENQ9NUL5 291 aaKnown RBP12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 WIPI2Q9Y4P8 454 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A10PA6NDY2 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A18PA6NE21 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A16PA6NEW6 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A20PA6NIJ5 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A8PA6NJQ4 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A7PA6NKC0 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A22PA8MWA6 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A12PA8MX19 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A5PA8MXJ8 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A23PA8MXZ1 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A15PP0C7V4 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A13PP0C7W8 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A14PP0C7W9 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM90A24PP0C7X0 464 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 REG1BP48304 166 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 HBG1P69891 147 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 HBG2P69892 147 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 SLC38A11Q08AI6 406 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 DOLPP1Q86YN1 238 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 SGMS2Q8NHU3 365 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 SAP30LQ9HAJ7 183 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 ARHGAP32A7KAX9 2087 aa12.01□□□□□ -0.49
SHROOM1-208ENST00000617339 F2Z2F3 143 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 LYNX1G3V0Z9 82 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 H0Y980 276 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 ZG16O60844 167 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 CLDN14O95500 239 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 LYNX1P0DP58 116 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 GPR12P47775 334 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 Q8IYB0 196 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 CIB3Q96Q77 187 aaPredicted RBP12□□□□□ -0.49
SHROOM1-208ENST00000617339 TMEM106BQ9NUM4 274 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 SLC25A15Q9Y619 301 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 DUXBA0A1W2PPF3 345 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 LRRC30A6NM36 301 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 LINC00473A8K010 186 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 IGLV2-14P01704 120 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 LINC00614P0C842 121 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 H2BFWTQ7Z2G1 175 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 LYG1Q8N1E2 194 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 OR10G9Q8NGN4 311 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 OR10G7Q8NGN6 311 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 TAF15Q92804 592 aaKnown RBP eCLIP12□□□□□ -0.49
SHROOM1-208ENST00000617339 SONP18583 2426 aaKnown RBP12□□□□□ -0.49
SHROOM1-208ENST00000617339 ERVK11-1P61568 191 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 TMEM183BQ1AE95 376 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 FFAR4Q5NUL3 377 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 RAB40CQ96S21 281 aa12□□□□□ -0.49
SHROOM1-208ENST00000617339 WDR61Q9GZS3 305 aaKnown RBP12□□□□□ -0.49
SHROOM1-208ENST00000617339 SERF1AO75920 110 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 MYOD1P15172 320 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 LRRC75BQ2VPJ9 315 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 GCSAMQ8N6F7 178 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 Q8NFD4 153 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 FAM57AQ8TBR7 257 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 IGKV1D-17A0A075B6S4 117 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 C11orf94C9JXX5 98 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 TXN2Q99757 166 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 FASNP49327 2511 aaKnown RBP11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 NDUFB4O95168 129 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 BSPH1Q075Z2 132 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 ZNF146Q15072 292 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 COL5A1-AS1Q5SY13 56 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 OR5D13Q8NGL4 314 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 ANAPC16Q96DE5 110 aa11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 NEIL1Q96FI4 390 aaPredicted RBP11.99□□□□□ -0.49
SHROOM1-208ENST00000617339 C20orf202A1L168 122 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 TPPP2P59282 170 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 ATOH7Q8N100 152 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 ZNF114Q8NC26 417 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 LIN7CQ9NUP9 197 aaKnown RBP11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 APELAP0DMC3 54 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 GAGE1Q13065 139 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 CATR1Q13166 79 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 C5orf30Q96GV9 206 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 BSNQ9UPA5 3926 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 OOEPA6NGQ2 149 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 IL6RP08887 468 aaPredicted RBP11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 ATP5G3P48201 142 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 TFF3Q07654 80 aa11.98□□□□□ -0.49
SHROOM1-208ENST00000617339 USP9XQ93008 2570 aaPredicted RBP11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 CD3EP07766 207 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 COX5AP20674 150 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 NPPCP23582 126 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 ERVK-16P61578 105 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 ENY2Q9NPA8 101 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 ABCA2Q9BZC7 2435 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 A0A0G2JNJ9 132 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 ODAMA1E959 279 aa11.97□□□□□ -0.49
SHROOM1-208ENST00000617339 SRP14P37108 136 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms