RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CRYAAP02489 173 aa8.79□□□□□ -1
LIG1-220ENST00000601091 PF4P02776 101 aa8.79□□□□□ -1
LIG1-220ENST00000601091 ZFP36L1Q07352 338 aaKnown RBP8.79□□□□□ -1
LIG1-220ENST00000601091 C10orf91Q5T1B1 145 aa8.79□□□□□ -1
LIG1-220ENST00000601091 FA2HQ7L5A8 372 aa8.79□□□□□ -1
LIG1-220ENST00000601091 STARD4Q96DR4 205 aa8.79□□□□□ -1
LIG1-220ENST00000601091 PROCRQ9UNN8 238 aa8.79□□□□□ -1
LIG1-220ENST00000601091 ZNF318Q5VUA4 2279 aa8.79□□□□□ -1
LIG1-220ENST00000601091 GVINP1Q7Z2Y8 2422 aa8.79□□□□□ -1
LIG1-220ENST00000601091 M0R1X1 148 aa8.79□□□□□ -1
LIG1-220ENST00000601091 CXCL1P09341 107 aa8.79□□□□□ -1
LIG1-220ENST00000601091 SPATA45Q537H7 98 aa8.79□□□□□ -1
LIG1-220ENST00000601091 KLHDC1Q8N7A1 406 aa8.79□□□□□ -1
LIG1-220ENST00000601091 OR9G4Q8NGQ1 327 aa8.79□□□□□ -1
LIG1-220ENST00000601091 OR5P3Q8WZ94 311 aa8.79□□□□□ -1
LIG1-220ENST00000601091 JMJD8Q96S16 334 aa8.79□□□□□ -1
LIG1-220ENST00000601091 CXXC4Q9H2H0 198 aa8.79□□□□□ -1
LIG1-220ENST00000601091 HES4Q9HCC6 221 aa8.79□□□□□ -1
LIG1-220ENST00000601091 IGHV3-43A0A0B4J1X8 118 aa8.79□□□□□ -1
LIG1-220ENST00000601091 PRR33A8MZF0 331 aa8.79□□□□□ -1
LIG1-220ENST00000601091 FCGR3BO75015 233 aa8.79□□□□□ -1
LIG1-220ENST00000601091 IGHV3-43DP0DP04 118 aa8.79□□□□□ -1
LIG1-220ENST00000601091 G6PCP35575 357 aa8.79□□□□□ -1
LIG1-220ENST00000601091 GALR1P47211 349 aa8.79□□□□□ -1
LIG1-220ENST00000601091 KRTDAPP60985 99 aa8.79□□□□□ -1
LIG1-220ENST00000601091 ZXDAP98168 799 aa8.79□□□□□ -1
LIG1-220ENST00000601091 CENPVQ7Z7K6 275 aaPredicted RBP8.79□□□□□ -1
LIG1-220ENST00000601091 FGFRL1Q8N441 504 aa8.79□□□□□ -1
LIG1-220ENST00000601091 DOCK11Q5JSL3 2073 aa8.78□□□□□ -1
LIG1-220ENST00000601091 CCL20P78556 96 aa8.78□□□□□ -1
LIG1-220ENST00000601091 TMEM42Q69YG0 159 aa8.78□□□□□ -1
LIG1-220ENST00000601091 GGNQ86UU5 652 aa8.78□□□□□ -1
LIG1-220ENST00000601091 LSM10Q969L4 123 aaKnown RBP8.78□□□□□ -1
LIG1-220ENST00000601091 NEIL1Q96FI4 390 aaPredicted RBP8.78□□□□□ -1
LIG1-220ENST00000601091 PLA2G2EQ9NZK7 142 aa8.78□□□□□ -1
LIG1-220ENST00000601091 SHISA7A6NL88 538 aa8.78□□□□□ -1
LIG1-220ENST00000601091 CD99P14209 185 aa8.78□□□□□ -1
LIG1-220ENST00000601091 CD300EQ496F6 205 aaPredicted RBP8.78□□□□□ -1
LIG1-220ENST00000601091 ZNF474Q6S9Z5 364 aaPredicted RBP8.78□□□□□ -1
LIG1-220ENST00000601091 OR4C12Q96R67 309 aa8.78□□□□□ -1
LIG1-220ENST00000601091 RPRMQ9NS64 109 aa8.78□□□□□ -1
LIG1-220ENST00000601091 FZR1Q9UM11 496 aa8.78□□□□□ -1
LIG1-220ENST00000601091 PKIGQ9Y2B9 76 aa8.78□□□□□ -1
LIG1-220ENST00000601091 V9GYY9 64 aa8.78□□□□□ -1
LIG1-220ENST00000601091 IGKV1D-13A0A0B4J2D9 117 aa8.78□□□□□ -1
LIG1-220ENST00000601091 ZNF785A8K8V0 405 aa8.78□□□□□ -1
LIG1-220ENST00000601091 IFNL4K9M1U5 179 aa8.78□□□□□ -1
LIG1-220ENST00000601091 IGKV1-13P0DP09 117 aa8.78□□□□□ -1
LIG1-220ENST00000601091 SRP14P37108 136 aaKnown RBP8.78□□□□□ -1
LIG1-220ENST00000601091 RPS20P60866 119 aaKnown RBP8.78□□□□□ -1
LIG1-220ENST00000601091 ID3Q02535 119 aa8.78□□□□□ -1
LIG1-220ENST00000601091 SPINK9Q5DT21 86 aa8.78□□□□□ -1
LIG1-220ENST00000601091 ZNF880Q6PDB4 577 aa8.78□□□□□ -1
LIG1-220ENST00000601091 SLC23A3Q6PIS1 610 aa8.78□□□□□ -1
LIG1-220ENST00000601091 ABHD5Q8WTS1 349 aa8.78□□□□□ -1
LIG1-220ENST00000601091 SIGLEC12Q96PQ1 595 aa8.78□□□□□ -1
LIG1-220ENST00000601091 ZNF703Q9H7S9 590 aaPredicted RBP8.78□□□□□ -1
LIG1-220ENST00000601091 DEPPQ9NTK1 212 aa8.78□□□□□ -1
LIG1-220ENST00000601091 ZNF581Q9P0T4 197 aa8.78□□□□□ -1
LIG1-220ENST00000601091 IL36RNQ9UBH0 155 aa8.78□□□□□ -1
LIG1-220ENST00000601091 WIPI2Q9Y4P8 454 aa8.78□□□□□ -1
LIG1-220ENST00000601091 TRAV17A0A0B4J275 112 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 CTXND1A0A1B0GTU2 59 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 K7N7A8 449 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 NTN3O00634 580 aaPredicted RBP8.77□□□□□ -1.01
LIG1-220ENST00000601091 LRRC75BQ2VPJ9 315 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 ZNF506Q5JVG8 444 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 SCCPDHQ8NBX0 429 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 DEFB108BQ8NET1 73 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 TAF15Q92804 592 aaKnown RBP eCLIP8.77□□□□□ -1.016e-7■■■■□ 23.8
LIG1-220ENST00000601091 GMPPAQ96IJ6 420 aaPredicted RBP8.77□□□□□ -1.01
LIG1-220ENST00000601091 MANBALQ9NQG1 85 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 ELOVL5Q9NYP7 299 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 SRP19P09132 144 aaKnown RBP8.77□□□□□ -1.01
LIG1-220ENST00000601091 P2RY6Q15077 328 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 RSPO1Q2MKA7 263 aaPredicted RBP8.77□□□□□ -1.01
LIG1-220ENST00000601091 HES3Q5TGS1 186 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 ZADH2Q8N4Q0 377 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 MRPL30Q8TCC3 161 aaKnown RBP8.77□□□□□ -1.01
LIG1-220ENST00000601091 LRRC29Q8WV35 223 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 CRIM1Q9NZV1 1036 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 C7orf71A4D174 169 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 LRRC3CA6NJW4 275 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 C1QTNF4Q9BXJ3 329 aa8.77□□□□□ -1.01
LIG1-220ENST00000601091 GPR179Q6PRD1 2367 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 FAM90A26D6RGX4 464 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 SPINK8P0C7L1 97 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 GNG5P63218 68 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 HGFACQ04756 655 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 ZNF585BQ52M93 769 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 ZC2HC1AQ96GY0 325 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 HSD17B10Q99714 261 aaKnown RBP8.76□□□□□ -1.01
LIG1-220ENST00000601091 INSIG2Q9Y5U4 225 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.76□□□□□ -1.01
LIG1-220ENST00000601091 GLIPR1P48060 266 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 MEF2BQ02080 365 aaPredicted RBP8.76□□□□□ -1.01
LIG1-220ENST00000601091 ZNF90Q03938 601 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 ZNF415Q09FC8 603 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 OR2T10Q8NGZ9 312 aa8.76□□□□□ -1.01
LIG1-220ENST00000601091 OR13C6PQ8NH95 151 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms