RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 HES3Q5TGS1 186 aa15.18■□□□□ 0.02
UPF1-210ENST00000600689 Q8TCH9 128 aa15.18■□□□□ 0.02
UPF1-210ENST00000600689 RNASE8Q8TDE3 154 aaKnown RBP15.18■□□□□ 0.02
UPF1-210ENST00000600689 C20orf202A1L168 122 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 ZNF83P51522 516 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 HELTA6NFD8 242 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 PROP1O75360 226 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 HYPMO75409 117 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 C3orf79P0CE67 100 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 ZNF146Q15072 292 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 B4GALT7Q9UBV7 327 aa15.17■□□□□ 0.02
UPF1-210ENST00000600689 A0A1W2PS18 150 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 NDUFB8O95169 186 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 LINC00479Q96M42 142 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 ZFP30Q9Y2G7 519 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 DCHS1Q96JQ0 3298 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 SMPD2O60906 423 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 OPRK1P41145 380 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 ZNF718Q3SXZ3 478 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 NRN1LQ496H8 165 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 Q56UQ5 140 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 SGK494Q96LW2 274 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 TIMM8BQ9Y5J9 83 aaPredicted RBP15.16■□□□□ 0.02
UPF1-210ENST00000600689 V9GYV3 84 aa15.16■□□□□ 0.02
UPF1-210ENST00000600689 TNRC6AQ8NDV7 1962 aaKnown RBP15.16■□□□□ 0.02
UPF1-210ENST00000600689 LINC00614P0C842 121 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 GPR6P46095 362 aaPredicted RBP15.15■□□□□ 0.02
UPF1-210ENST00000600689 ERVK-16P61578 105 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 GAGE1Q13065 139 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 Q8IYB0 196 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 C1orf174Q8IYL3 243 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 OR4B1Q8NGF8 309 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 RNF2Q99496 336 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 LAMTOR2Q9Y2Q5 125 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 IGHV3OR15-7A0A075B7D8 119 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 CCL25O15444 150 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 PRR27Q6MZM9 219 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 Q8N976 141 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 PLEKHA3Q9HB20 300 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 RNF24Q9Y225 148 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 TRIP6Q15654 476 aaKnown RBP15.15■□□□□ 0.02
UPF1-210ENST00000600689 MLANAQ16655 118 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 ETFRF1Q6IPR1 90 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 ZBTB34Q8NCN2 500 aa15.15■□□□□ 0.02
UPF1-210ENST00000600689 DPRXA6NFQ7 191 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 GFRA3O60609 400 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 TMEM140Q9NV12 185 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 PPP1R14DQ9NXH3 145 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 CLCF1Q9UBD9 225 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 ROS1P08922 2347 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 C21orf140B9A014 251 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 RHOBP62745 196 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 EIF4EBP1Q13541 118 aaPredicted RBP15.14■□□□□ 0.01
UPF1-210ENST00000600689 BORCS7Q96B45 105 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 TCF19Q9Y242 345 aa15.14■□□□□ 0.01
UPF1-210ENST00000600689 DUTP33316 252 aaKnown RBP15.13■□□□□ 0.01
UPF1-210ENST00000600689 RELBQ01201 579 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 FAM168AQ92567 244 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 KMT2EQ8IZD2 1858 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 SPINT2O43291 252 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 IGHV3-48P01763 117 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 IGLC2P0DOY2 106 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 IGLC3P0DOY3 106 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 BCL2L2Q92843 193 aaPredicted RBP15.13■□□□□ 0.01
UPF1-210ENST00000600689 RAB1CQ92928 201 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 C1orf159Q96HA4 380 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 SSBP4Q9BWG4 385 aaPredicted RBP15.13■□□□□ 0.01
UPF1-210ENST00000600689 UQCR10Q9UDW1 63 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 ABCA1O95477 2261 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 TIGITQ495A1 244 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 KLF14Q8TD94 323 aaPredicted RBP15.13■□□□□ 0.01
UPF1-210ENST00000600689 GMPPAQ96IJ6 420 aaPredicted RBP15.13■□□□□ 0.01
UPF1-210ENST00000600689 NPVFQ9HCQ7 196 aa15.13■□□□□ 0.01
UPF1-210ENST00000600689 BMPR1BO00238 502 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 TIMM8AO60220 97 aaPredicted RBP15.12■□□□□ 0.01
UPF1-210ENST00000600689 CAMPP49913 170 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 MEOX1P50221 254 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 TEPPQ6URK8 271 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 KCNS1Q96KK3 526 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 SLC35D1Q9NTN3 355 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 PMCHL1Q16048 86 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 FBXW9Q5XUX1 488 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 LHFPL4Q7Z7J7 247 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 NANOS1Q8WY41 292 aaKnown RBP15.12■□□□□ 0.01
UPF1-210ENST00000600689 S1PR3Q99500 378 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 ABI3Q9P2A4 366 aa15.12■□□□□ 0.01
UPF1-210ENST00000600689 ZNF324O75467 553 aaPredicted RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 CA2P00918 260 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 CD24P25063 80 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 TMEM136Q6ZRR5 245 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 GP6Q9HCN6 339 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 TET2Q6N021 2002 aaPredicted RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 USF1P22415 310 aaPredicted RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 ZNF134P52741 427 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 RPP30P78346 268 aaKnown RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 MRPL49Q13405 166 aaKnown RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 SLC35E4Q6ICL7 350 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 RNASEKQ6P5S7 137 aaKnown RBP15.11■□□□□ 0.01
UPF1-210ENST00000600689 CNEP1R1Q8N9A8 125 aa15.11■□□□□ 0.01
UPF1-210ENST00000600689 ASCL3Q9NQ33 180 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms