RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 A0A0B4J293 547 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 A0A0G2JLM5 398 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 WI2-2373I1.2A0A1W2PRP0 233 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 SEC14L6B5MCN3 397 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 FGF2P09038 288 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 TRAPPC2P0DI81 140 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 TRAPPC2BP0DI82 140 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 S100GP29377 79 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 ATP5G2Q06055 141 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 BAK1Q16611 211 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 GDPD1Q8N9F7 314 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 GLYATL2Q8WU03 294 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 USMG5Q96IX5 58 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 PRRT1Q99946 306 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 MCRIP2Q9BUT9 160 aaKnown RBP8.55□□□□□ -1.04
VRK3-210ENST00000596121 QTRT1Q9BXR0 403 aaKnown RBP8.55□□□□□ -1.04
VRK3-210ENST00000596121 COMMD5Q9GZQ3 224 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 PRR13Q9NZ81 148 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 NDUFA13Q9P0J0 144 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 COPZ2Q9P299 210 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 OR51B2Q9Y5P1 312 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 S4R3C0 116 aa8.55□□□□□ -1.04
VRK3-210ENST00000596121 A6NHS1 94 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 FAM223BA6NKX1 122 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 C15orf61A6NNL5 157 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 K7EIL1 84 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 BMPR1BO00238 502 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 OVOL1O14753 267 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 SNAPC5O75971 98 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 IGHV3-23P01764 117 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 SERPINE2P07093 398 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 OR5AC1P0C628 307 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 UCP1P25874 307 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 EXOSC2Q13868 293 aaKnown RBP8.54□□□□□ -1.04
VRK3-210ENST00000596121 KLF5Q13887 457 aaPredicted RBP8.54□□□□□ -1.04
VRK3-210ENST00000596121 SURF2Q15527 256 aaPredicted RBP8.54□□□□□ -1.04
VRK3-210ENST00000596121 C15orf32Q32M92 178 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 IL34Q6ZMJ4 242 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 Q6ZRM9 215 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 H2BFWTQ7Z2G1 175 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 SLC25A42Q86VD7 318 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 FAM223AQ8IWN6 122 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 NECAP1Q8NC96 275 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 OR1L8Q8NGR8 309 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 HINT2Q9BX68 163 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 NAA60Q9H7X0 242 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 RANGRFQ9HD47 186 aaPredicted RBP8.54□□□□□ -1.04
VRK3-210ENST00000596121 MCUBQ9NWR8 336 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 PEF1Q9UBV8 284 aaKnown RBP8.54□□□□□ -1.04
VRK3-210ENST00000596121 FBXL7Q9UJT9 491 aa8.54□□□□□ -1.04
VRK3-210ENST00000596121 DNAH9Q9NYC9 4486 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 TEX13DA0A0J9YY54 714 aaPredicted RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 MFSD2BA6NFX1 497 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 CRYM-AS1A6NIL9 109 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 PPP5D1E7EU14 171 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 CDS2O95674 445 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 HLA-AP01891 365 aaKnown RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 OR13C7P0DN81 318 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 SUPT4H1P63272 117 aaKnown RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 SPANXN2Q5MJ10 180 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 C9orf66Q5T8R8 295 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 ACSM6Q6P461 480 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 SELENOHQ8IZQ5 122 aaKnown RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 TOMM5Q8N4H5 51 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 CCDC71LQ8N9Z2 235 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 CCDC140Q96MF4 163 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 SRSF8Q9BRL6 282 aaKnown RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 TMEM222Q9H0R3 208 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 PRNDQ9UKY0 176 aa8.53□□□□□ -1.04
VRK3-210ENST00000596121 C14orf166Q9Y224 244 aaKnown RBP8.53□□□□□ -1.04
VRK3-210ENST00000596121 ECI1P42126 302 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 SYNJ2BPP57105 145 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 HSPE1P61604 102 aaKnown RBP8.52□□□□□ -1.05
VRK3-210ENST00000596121 TMEM187Q14656 261 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 TRIM16LQ309B1 348 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 SPINK9Q5DT21 86 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 HAPLN4Q86UW8 402 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 OR5B3Q8NH48 314 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 SCP2D1Q9UJQ7 156 aa8.52□□□□□ -1.05
VRK3-210ENST00000596121 DEFA4P12838 97 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 EDN2P20800 178 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 CNPY1Q3B7I2 92 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 ADAMTSL5Q6ZMM2 481 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 OR4A16Q8NH70 328 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 LSM10Q969L4 123 aaKnown RBP8.51□□□□□ -1.05
VRK3-210ENST00000596121 GPR146Q96CH1 333 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 TMEM56Q96MV1 263 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 TSC22D3Q99576 134 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 GPR61Q9BZJ8 451 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 F11RQ9Y624 299 aaKnown RBP8.51□□□□□ -1.05
VRK3-210ENST00000596121 TMEM56-RWDD3S4R434 201 aa8.51□□□□□ -1.05
VRK3-210ENST00000596121 IGHV3-21A0A0B4J1V1 117 aa8.5□□□□□ -1.05
VRK3-210ENST00000596121 LINC00854A0A1B0GVQ3 168 aa8.5□□□□□ -1.05
VRK3-210ENST00000596121 F8W735 103 aaPredicted RBP8.5□□□□□ -1.05
VRK3-210ENST00000596121 ST8SIA3O43173 380 aa8.5□□□□□ -1.05
VRK3-210ENST00000596121 SAP30O75446 220 aa8.5□□□□□ -1.05
VRK3-210ENST00000596121 B3GALNT1O75752 331 aa8.5□□□□□ -1.05
VRK3-210ENST00000596121 OR2C1O95371 312 aa8.5□□□□□ -1.05
VRK3-210ENST00000596121 CSN3P07498 182 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms