RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PDPNQ86YL7 162 aa16■□□□□ 0.15
CLIP3-206ENST00000593074 C2CD4CQ8TF44 421 aa16■□□□□ 0.15
CLIP3-206ENST00000593074 HINT2Q9BX68 163 aa16■□□□□ 0.15
CLIP3-206ENST00000593074 LYNX1G3V0Z9 82 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 LYNX1P0DP58 116 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 REG1BP48304 166 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 BSXQ3C1V8 233 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 TEPPQ6URK8 271 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 C11orf42Q8N5U0 333 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 OR9G1Q8NH87 305 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 GATAD1Q8WUU5 269 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 ZZEF1O43149 2961 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 ANKHD1Q8IWZ3 2542 aaKnown RBP15.99■□□□□ 0.15
CLIP3-206ENST00000593074 ATP5IP56385 69 aaPredicted RBP15.99■□□□□ 0.15
CLIP3-206ENST00000593074 FLYWCH2Q96CP2 140 aaKnown RBP15.99■□□□□ 0.15
CLIP3-206ENST00000593074 PCGF1Q9BSM1 259 aa15.99■□□□□ 0.15
CLIP3-206ENST00000593074 DIAPH2-AS1Q14236 149 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 MIC13Q5XKP0 118 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 OR4C13Q8NGP0 309 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 TMEM242Q9NWH2 141 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 PIEZO1Q92508 2521 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 A0A1W2PPV4 95 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 C2orf83Q53S99 150 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 CYP2G1PQ6ZSU1 146 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 NEIL1Q96FI4 390 aaPredicted RBP15.98■□□□□ 0.15
CLIP3-206ENST00000593074 SMIM7Q9BQ49 75 aa15.98■□□□□ 0.15
CLIP3-206ENST00000593074 PAGE4O60829 102 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 IGHV2-70P01814 119 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 ELOBQ15370 118 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 IQCF2Q8IXL9 164 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 OR4A5Q8NH83 315 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 RAB1BQ9H0U4 201 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 PATZ1Q9HBE1 687 aaKnown RBP15.97■□□□□ 0.15
CLIP3-206ENST00000593074 NAT8Q9UHE5 227 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 RALYQ9UKM9 306 aaKnown RBP15.97■□□□□ 0.15
CLIP3-206ENST00000593074 WASHC3Q9Y3C0 194 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 NBASA2RRP1 2371 aa15.97■□□□□ 0.15
CLIP3-206ENST00000593074 OPN1MWP04001 364 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 OPN1MW2P0DN77 364 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 OPN1MW3P0DN78 364 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 USF1P22415 310 aaPredicted RBP15.96■□□□□ 0.15
CLIP3-206ENST00000593074 RPL8P62917 257 aaKnown RBP15.96■□□□□ 0.15
CLIP3-206ENST00000593074 ZNF841Q6ZN19 808 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 C1QL4Q86Z23 238 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 OR1L8Q8NGR8 309 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 TMEM167AQ8TBQ9 72 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 TMEM133Q9H2Q1 129 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 NDUFA4L2Q9NRX3 87 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 INS-IGF2F8WCM5 200 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 RPL29P47914 159 aaKnown RBP15.96■□□□□ 0.15
CLIP3-206ENST00000593074 B2MP61769 119 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 STPG3Q8N7X2 389 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 OR4F5Q8NH21 305 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 VSTM2AQ8TAG5 236 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 Q8WTZ3 238 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 SSMEM1Q8WWF3 244 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 OR4F4Q96R69 305 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 CBLN4Q9NTU7 201 aa15.96■□□□□ 0.15
CLIP3-206ENST00000593074 TNCP24821 2201 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 TMEM8BA6NDV4 472 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 STAG3L2P0CL84 134 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 STAG3L3P0CL85 134 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 RNASE2P10153 161 aaKnown RBP15.95■□□□□ 0.14
CLIP3-206ENST00000593074 RAB31Q13636 194 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 ZNF343Q6P1L6 599 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 TGIF2LXQ8IUE1 241 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 TNFRSF14Q92956 283 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 COMMD5Q9GZQ3 224 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 PARLQ9H300 379 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 COL6A6A6NMZ7 2263 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 IGLV2-23P01705 113 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 PRR20EP86478 221 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 PRR20CP86479 221 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 PRR20DP86480 221 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 PRR20BP86481 221 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 PRR20AP86496 221 aa15.95■□□□□ 0.14
CLIP3-206ENST00000593074 RPUSD4Q96CM3 377 aaKnown RBP15.95■□□□□ 0.14
CLIP3-206ENST00000593074 C11orf94C9JXX5 98 aa15.94■□□□□ 0.14
CLIP3-206ENST00000593074 RND2P52198 227 aa15.94■□□□□ 0.14
CLIP3-206ENST00000593074 TMEM241Q24JQ0 296 aa15.94■□□□□ 0.14
CLIP3-206ENST00000593074 ARL14EPLP0DKL9 152 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 IGFBP2P18065 325 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 IL3RAP26951 378 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 MC5RP33032 325 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 C4orf17Q53FE4 359 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 SPNS3Q6ZMD2 512 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 TMEM144Q7Z5S9 345 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 OR10W1Q8NGF6 305 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 RELNP78509 3460 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 CLDN34H7C241 214 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 CXorf1O96002 111 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 RBP4P02753 201 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 CXCL1P09341 107 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 ZNF674Q2M3X9 581 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 ABHD5Q8WTS1 349 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 CTDSP1Q9GZU7 261 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 PRELID1Q9Y255 219 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 URGCP-MRPS24S4R325 110 aa15.93■□□□□ 0.14
CLIP3-206ENST00000593074 IGHV2-26A0A0B4J1V2 119 aa15.92■□□□□ 0.14
CLIP3-206ENST00000593074 PDE6DO43924 150 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms