RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 KLK9Q9UKQ9 250 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 DMRT1Q9Y5R6 373 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 V9GYH0 126 aa12.03□□□□□ -0.48
LIG3-215ENST00000592690 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.02□□□□□ -0.49
LIG3-215ENST00000592690 DISC1C4P0D8 188 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 BMPR1BO00238 502 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 SNAPC5O75971 98 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 DHFRP00374 187 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 IGHV3-23P01764 117 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 SERPINE2P07093 398 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 CTSDP07339 412 aaPredicted RBP12.02□□□□□ -0.49
LIG3-215ENST00000592690 TRAPPC2P0DI81 140 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 TRAPPC2BP0DI82 140 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 DEFA4P12838 97 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 SYNJ2BPP57105 145 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 WT1-ASQ06250 92 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 DEFB121Q5J5C9 76 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 HAPLN4Q86UW8 402 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 ZFAND1Q8TCF1 268 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 SRSF8Q9BRL6 282 aaKnown RBP12.02□□□□□ -0.49
LIG3-215ENST00000592690 HINT2Q9BX68 163 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 NDUFA4L2Q9NRX3 87 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 COPZ2Q9P299 210 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 ZMAT5Q9UDW3 170 aaKnown RBP12.02□□□□□ -0.49
LIG3-215ENST00000592690 ZNF256Q9Y2P7 627 aaPredicted RBP12.02□□□□□ -0.49
LIG3-215ENST00000592690 OR51B2Q9Y5P1 312 aa12.02□□□□□ -0.49
LIG3-215ENST00000592690 C3orf85A0A1B0GTC6 90 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 C15orf61A6NNL5 157 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 PPP5D1E7EU14 171 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 OR13C7P0DN81 318 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 ZNF79Q15937 498 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 IZUMO4Q1ZYL8 232 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 RPEL1Q2QD12 228 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 SP6Q3SY56 376 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 H2BFWTQ7Z2G1 175 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 CCDC71LQ8N9Z2 235 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 OR51S1Q8NGJ8 323 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 CCDC140Q96MF4 163 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 OR4C12Q96R67 309 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 TMEM14BQ9NUH8 114 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 PRNDQ9UKY0 176 aa12.01□□□□□ -0.49
LIG3-215ENST00000592690 MFSD2BA6NFX1 497 aa12□□□□□ -0.49
LIG3-215ENST00000592690 IGKV1-5P01602 117 aa12□□□□□ -0.49
LIG3-215ENST00000592690 HIST1H1BP16401 226 aaKnown RBP12□□□□□ -0.49
LIG3-215ENST00000592690 THOC7Q6I9Y2 204 aaKnown RBP12□□□□□ -0.49
LIG3-215ENST00000592690 GDPD1Q8N9F7 314 aa12□□□□□ -0.49
LIG3-215ENST00000592690 OR9G4Q8NGQ1 327 aa12□□□□□ -0.49
LIG3-215ENST00000592690 LSM10Q969L4 123 aaKnown RBP12□□□□□ -0.49
LIG3-215ENST00000592690 TRIM63Q969Q1 353 aa12□□□□□ -0.49
LIG3-215ENST00000592690 TSC22D3Q99576 134 aa12□□□□□ -0.49
LIG3-215ENST00000592690 PRRT1Q99946 306 aa12□□□□□ -0.49
LIG3-215ENST00000592690 RTBDNQ9BSG5 229 aaPredicted RBP12□□□□□ -0.49
LIG3-215ENST00000592690 THAP7Q9BT49 309 aaPredicted RBP12□□□□□ -0.49
LIG3-215ENST00000592690 ELOVL1Q9BW60 279 aa12□□□□□ -0.49
LIG3-215ENST00000592690 C5orf66Q9H5L9 145 aa12□□□□□ -0.49
LIG3-215ENST00000592690 C14orf166Q9Y224 244 aaKnown RBP12□□□□□ -0.49
LIG3-215ENST00000592690 LY86O95711 162 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 HLA-AP01891 365 aaKnown RBP11.99□□□□□ -0.49
LIG3-215ENST00000592690 SPNP16150 400 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 S100A5P33763 92 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 MFAP2P55001 183 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 SURF2Q15527 256 aaPredicted RBP11.99□□□□□ -0.49
LIG3-215ENST00000592690 PYDC2Q56P42 97 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 CLEC19AQ6UXS0 136 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 IL34Q6ZMJ4 242 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 HSD17B13Q7Z5P4 300 aaPredicted RBP11.99□□□□□ -0.49
LIG3-215ENST00000592690 CCDC190Q86UF4 302 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 OR5B3Q8NH48 314 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 OR4A16Q8NH70 328 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 SLC2A8Q9NY64 477 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 FKBP11Q9NYL4 201 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 GPR132Q9UNW8 380 aa11.99□□□□□ -0.49
LIG3-215ENST00000592690 OR5AC1P0C628 307 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 P0C879 139 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 UCP1P25874 307 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 MECP2P51608 486 aaKnown RBP11.98□□□□□ -0.49
LIG3-215ENST00000592690 AKR1C2P52895 323 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 KLF9Q13886 244 aaPredicted RBP11.98□□□□□ -0.49
LIG3-215ENST00000592690 TRIM16LQ309B1 348 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 Q8N402 240 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 OR6Q1Q8NGQ2 317 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 EEF1AKMT3Q96AZ1 226 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 MCUBQ9NWR8 336 aa11.98□□□□□ -0.49
LIG3-215ENST00000592690 LSM4Q9Y4Z0 139 aaKnown RBP11.98□□□□□ -0.49
LIG3-215ENST00000592690 A0A0G2JRQ6 117 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 IGLV1-51P01701 117 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 CSN3P07498 182 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 FAM209BQ5JX69 171 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 LHFPL5Q8TAF8 219 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 TMEM56Q96MV1 263 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 NAA60Q9H7X0 242 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 SCP2D1Q9UJQ7 156 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 F11RQ9Y624 299 aaKnown RBP11.97□□□□□ -0.49
LIG3-215ENST00000592690 COL7A1Q02388 2944 aa11.97□□□□□ -0.49
LIG3-215ENST00000592690 TEX13DA0A0J9YY54 714 aaPredicted RBP11.96□□□□□ -0.49
LIG3-215ENST00000592690 CRYM-AS1A6NIL9 109 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 GGCTO75223 188 aaKnown RBP11.96□□□□□ -0.49
LIG3-215ENST00000592690 OR2C1O95371 312 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 ARL3P36405 182 aa11.96□□□□□ -0.49
LIG3-215ENST00000592690 PRCDQ00LT1 54 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms