RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CD28P10747 220 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 RPL27AP46776 148 aaKnown RBP7.24□□□□□ -1.25
VPS35-211ENST00000569950 AKR1C2P52895 323 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 ERVK-16P61578 105 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 HSPE1P61604 102 aaKnown RBP7.24□□□□□ -1.25
VPS35-211ENST00000569950 SRPXP78539 464 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 CD83Q01151 205 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 ECSCRQ19T08 205 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 RGS21Q2M5E4 152 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 PVRIGQ6DKI7 326 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 PLET1Q6UQ28 207 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 C18orf65Q6ZTR6 163 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 H2BFWTQ7Z2G1 175 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 ZNF695Q8IW36 515 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 TMEM170AQ8WVE7 144 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 FANCD2OSQ96PS1 177 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 AIFM2Q9BRQ8 373 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 PRNDQ9UKY0 176 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 ZNF257Q9Y2Q1 563 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 TRBV9A0A0B4J1U6 114 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 NPIPB5A8MRT5 1133 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 SNRPGP15A8MWD9 76 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 INS-IGF2F8WCM5 200 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 CCSO14618 274 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 BRI3O95415 125 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 HOXB5P09067 269 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 SLC25A6P12236 298 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 ANXA3P12429 323 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 CTRB1P17538 263 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 PRCDQ00LT1 54 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 TATDN3Q17R31 274 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 BSXQ3C1V8 233 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 SPINK9Q5DT21 86 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 CTRB2Q6GPI1 263 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 UNQ5815/PRO19632Q6UWF5 114 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 C12orf45Q8N5I9 185 aaPredicted RBP7.23□□□□□ -1.25
VPS35-211ENST00000569950 TTC9CQ8N5M4 171 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 OR5AU1Q8NGC0 362 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 OR4D5Q8NGN0 318 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 OR1L8Q8NGR8 309 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 OR5B3Q8NH48 314 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 FAM110DQ8TAY7 271 aaPredicted RBP7.23□□□□□ -1.25
VPS35-211ENST00000569950 ZNF414Q96IQ9 312 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 ZNF747Q9BV97 191 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 C11orf1Q9H5F2 150 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 HSPB7Q9UBY9 170 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 TMED3Q9Y3Q3 217 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 OR51B2Q9Y5P1 312 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 ALG5Q9Y673 324 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 NOTCH3Q9UM47 2321 aa7.23□□□□□ -1.25
VPS35-211ENST00000569950 NOTCH1P46531 2555 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 IGLV11-55A0A075B6I3 123 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 A0A1B0GU03 582 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 PSMB11A5LHX3 300 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 CREBL2O60519 120 aaPredicted RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 PRAF2O60831 178 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 FBXO24O75426 580 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 CNIH1O95406 144 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 TMEM50AO95807 157 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 PRH1P02810 166 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 RPLP1P05386 114 aaKnown RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 REG1AP05451 166 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 TRAPPC2P0DI81 140 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 TRAPPC2BP0DI82 140 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 SULT1A3P0DMM9 295 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 SULT1A4P0DMN0 295 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 DEFA5Q01523 94 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 FOXE3Q13461 319 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 SMCO1Q147U7 214 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 CXorf66Q5JRM2 361 aaPredicted RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 C11orf44Q8N8P7 122 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 OR5T1Q8NG75 326 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 OR52E5Q8NH55 327 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 RRNAD1Q96FB5 475 aaKnown RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 FYTTD1Q96QD9 318 aaKnown RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 SPIN2AQ99865 258 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 CITED2Q99967 270 aaPredicted RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 SPIN2BQ9BPZ2 258 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 SRSF8Q9BRL6 282 aaKnown RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 COMMD5Q9GZQ3 224 aa7.22□□□□□ -1.25
VPS35-211ENST00000569950 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.22□□□□□ -1.25
VPS35-211ENST00000569950 A0A1W2PN81 502 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 SNAPC5O75971 98 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 ATG12O94817 140 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 NXPH3O95157 252 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 RNASE2P10153 161 aaKnown RBP7.21□□□□□ -1.26
VPS35-211ENST00000569950 CXCL3P19876 107 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 PSMB6P28072 239 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 CHRNA7P36544 502 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 H2BFSP57053 126 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 ID3Q02535 119 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 TNFRSF9Q07011 255 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 OR2C3Q8N628 320 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 ZNF491Q8N8L2 437 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 ZBTB8BQ8NAP8 495 aaPredicted RBP7.21□□□□□ -1.26
VPS35-211ENST00000569950 ZNF114Q8NC26 417 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 OR4A16Q8NH70 328 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 SPATA3Q8NHX4 192 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 COQ8AQ8NI60 647 aa7.21□□□□□ -1.26
VPS35-211ENST00000569950 TMEM68Q96MH6 324 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms