RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 HPRT1P00492 218 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 WNT2P09544 360 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 CT45A1Q5HYN5 189 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 CT45A3Q8NHU0 189 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 IFI27L2Q9H2X8 130 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 DOK5Q9P104 306 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 SMPXQ9UHP9 88 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 BSNQ9UPA5 3926 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 SAA2-SAA4A0A096LPE2 208 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 IGHV1-46P01743 117 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 SAA2P0DJI9 122 aaPredicted RBP7.22□□□□□ -1.25
LINC00558-201ENST00000569422 REG1BP48304 166 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 LOXL3P58215 753 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 TCF15Q12870 199 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 PDLIM3Q53GG5 364 aaPredicted RBP7.22□□□□□ -1.25
LINC00558-201ENST00000569422 MIC13Q5XKP0 118 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 Q6ZS92 163 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 PARLQ9H300 379 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 SDF2L1Q9HCN8 221 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 RNF7Q9UBF6 113 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 JPT1Q9UK76 154 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 LAMP3Q9UQV4 416 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 ZGRF1Q86YA3 2104 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 TRGV10A0A0A0MS01 117 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 CTXND1A0A1B0GTU2 59 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 CLDN34H7C241 214 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 DMRTA1Q5VZB9 504 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 ZNF318Q5VUA4 2279 aa7.22□□□□□ -1.25
LINC00558-201ENST00000569422 C17orf112F2Z3M2 114 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 CEACAM4O75871 244 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 IRF2P14316 349 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 CD40P25942 277 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 HERV-K104P63124 156 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 PRB3Q04118 309 aaPredicted RBP7.21□□□□□ -1.25
LINC00558-201ENST00000569422 ATP6V1FQ16864 119 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 TMEM241Q24JQ0 296 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 C17orf58Q2M2W7 97 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 C16orf82Q7Z2V1 217 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 BOD1L2Q8IYS8 172 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 NHLRC2Q8NBF2 726 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 CCL17Q92583 94 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 YPEL4Q96NS1 127 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 MS4A5Q9H3V2 200 aa7.21□□□□□ -1.25
LINC00558-201ENST00000569422 ARFGEF3Q5TH69 2177 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 C11orf94C9JXX5 98 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 YPEL1O60688 119 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 IGHV2-5P01817 119 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 ATP5G3P48201 142 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 NKX6-1P78426 367 aaPredicted RBP7.21□□□□□ -1.26
LINC00558-201ENST00000569422 C1orf87Q8N0U7 546 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 H1FXQ92522 213 aaKnown RBP7.21□□□□□ -1.26
LINC00558-201ENST00000569422 TMEM186Q96B77 213 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 YPEL2Q96QA6 119 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 ELOVL1Q9BW60 279 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 ONECUT1Q9UBC0 465 aa7.21□□□□□ -1.26
LINC00558-201ENST00000569422 YLPM1P49750 1951 aaKnown RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BKO60814 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 ACTL6BO94805 426 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BJP06899 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BOP23527 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BBP33778 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BDP58876 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BCP62807 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST2H2BEQ16778 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 BSXQ3C1V8 233 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 ACOT6Q3I5F7 207 aaPredicted RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 FRZBQ92765 325 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BHQ93079 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BNQ99877 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 HIST1H2BMQ99879 126 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 DERL1Q9BUN8 251 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 METTL1Q9UBP6 276 aaKnown RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 TCF19Q9Y242 345 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 TLN1Q9Y490 2541 aaKnown RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 A0A087WWC5 75 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 ELOA3CA0A087WX78 387 aaPredicted RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 IGKV1-16P04430 117 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 TRGC1P0CF51 173 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 CCL3L1P16619 93 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 RELBQ01201 579 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 PRR30Q53SZ7 412 aaPredicted RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 MOB3BQ86TA1 216 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 ZNF383Q8NA42 475 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 NEIL1Q96FI4 390 aaPredicted RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 PCGF1Q9BSM1 259 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 ENY2Q9NPA8 101 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 A0A0G2JNJ9 132 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 KBTBD11-OT1A0A1B0GTJ5 212 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 PRRG2O14669 202 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 WIPF1O43516 503 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 OR4A8P0C604 315 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 RPL23P62829 140 aaKnown RBP7.2□□□□□ -1.26
LINC00558-201ENST00000569422 OR4A47Q6IF82 309 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 TREML4Q6UXN2 200 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 DOLPP1Q86YN1 238 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 OR4S2Q8NH73 311 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 Q9UFV3 132 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 NAT8Q9UHE5 227 aa7.2□□□□□ -1.26
LINC00558-201ENST00000569422 TIMM9Q9Y5J7 89 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms