RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TMEM70Q9BUB7 260 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 TMEM59Q9BXS4 323 aa9.09□□□□□ -0.95
CLK3-226ENST00000569406 TRBV20-1A0A075B6N2 111 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 A0A0A6YYD4 124 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 PRSS37A4D1T9 235 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 CCDC179H3BU77 68 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 CHST1O43916 411 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 EMC4Q5J8M3 183 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 FOXI2Q6ZQN5 318 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 PMCHL2Q9BQD1 86 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 CSDC2Q9Y534 153 aaKnown RBP9.08□□□□□ -0.96
CLK3-226ENST00000569406 TMED7-TICAM2A0A0A6YYA0 188 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 IGKV1D-43A0A0B4J1Z2 117 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 TMEM50AO95807 157 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 BLVRBP30043 206 aaPredicted RBP9.08□□□□□ -0.96
CLK3-226ENST00000569406 CLRN1P58418 232 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 RPL27P61353 136 aaKnown RBP9.08□□□□□ -0.96
CLK3-226ENST00000569406 CEACAM16Q2WEN9 425 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 PP6455Q8WZ26 134 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 BMPR1BO00238 502 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 KLF7O75840 302 aaPredicted RBP9.08□□□□□ -0.96
CLK3-226ENST00000569406 IGFBP3P17936 291 aaPredicted RBP9.08□□□□□ -0.96
CLK3-226ENST00000569406 TMEM50BP56557 158 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 LYPD6Q86Y78 171 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 SLC22A24Q8N4F4 322 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 PTH2Q96A98 100 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 GRAMD2BQ96HH9 432 aa9.08□□□□□ -0.96
CLK3-226ENST00000569406 IGKV1D-8A0A087WSZ0 117 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 A0A1B0GX78 115 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 VWC2LB2RUY7 222 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 MS4A18H0YCH9 400 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 DKK1O94907 266 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 NAPSAO96009 420 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 IGHMP01871 453 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 REG1AP05451 166 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 NPPCP23582 126 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 MS4A18Q3C1V0 323 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 TM4SF20Q53R12 229 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 MYO7BQ6PIF6 2116 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 OSR1Q8TAX0 266 aaPredicted RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 DOCK7Q96N67 2140 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 REPIN1Q9BWE0 567 aaKnown RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 OBP2BQ9NPH6 170 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 ONECUT1Q9UBC0 465 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 TRGV10A0A0A0MS01 117 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 PTGDSP41222 190 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 TCL1AP56279 114 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 GRB2P62993 217 aaKnown RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 DOK3Q7L591 496 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 LAMA5O15230 3695 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 SAA2-SAA4A0A096LPE2 208 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 A0A1W2PQM1 296 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 MT-CO3P00414 261 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 FCGR2BP31994 310 aaPredicted RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 SGCBQ16585 318 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 RNF144BQ7Z419 303 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 OR52N5Q8NH56 324 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 APOBEC3DQ96AK3 386 aaPredicted RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 TECRQ9NZ01 308 aaKnown RBP9.07□□□□□ -0.96
CLK3-226ENST00000569406 R4GN57 208 aa9.07□□□□□ -0.96
CLK3-226ENST00000569406 TRAV36DV7A0A075B6V5 113 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 CFIP05156 583 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 ISG15P05161 165 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 CDAP32320 146 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 TBR1Q16650 682 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 ZNF695Q8IW36 515 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 C3orf56Q8N813 242 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 C18orf32Q8TCD1 76 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 FABP5P3A8MUU1 101 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 ADAM20O43506 726 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 SYNGR1O43759 233 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 SSX8Q7RTT4 187 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 TEX29Q8N6K0 151 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 C18orf12Q96KH6 178 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 FSCN3Q9NQT6 498 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 MCTS1Q9ULC4 181 aaKnown RBP9.06□□□□□ -0.96
CLK3-226ENST00000569406 PCSK5Q92824 1860 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 LOC101059948A0A1B0GTJ6 334 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 LRRC75BQ2VPJ9 315 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 FAM69BQ5VUD6 431 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 ZFAND6Q6FIF0 208 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 RHBDD2Q6NTF9 364 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 GLMPQ8WWB7 406 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 LSM10Q969L4 123 aaKnown RBP9.06□□□□□ -0.96
CLK3-226ENST00000569406 TMEM191AQ9H0A3 160 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 IL36BQ9NZH7 164 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 INSIG2Q9Y5U4 225 aa9.06□□□□□ -0.96
CLK3-226ENST00000569406 PRSS29PA6NIE9 313 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 CGAP01215 116 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 MFAP4P55083 255 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 XGP55808 180 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 PLXDC1Q8IUK5 500 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 SPEM1Q8N4L4 309 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 RPP25LQ8N5L8 163 aaKnown RBP9.05□□□□□ -0.96
CLK3-226ENST00000569406 SPIN2AQ99865 258 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 SPIN2BQ9BPZ2 258 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 GGTLC1Q9BX51 225 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 SCRT2Q9NQ03 307 aa9.05□□□□□ -0.96
CLK3-226ENST00000569406 RALGAPA1Q6GYQ0 2036 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms