RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 STAG3L3P0CL85 134 aa12□□□□□ -0.49
VPS35-210ENST00000568784 OR4S2Q8NH73 311 aa12□□□□□ -0.49
VPS35-210ENST00000568784 IQCF6A8MYZ5 107 aa12□□□□□ -0.49
VPS35-210ENST00000568784 OPRK1P41145 380 aa12□□□□□ -0.49
VPS35-210ENST00000568784 RPL15P61313 204 aaKnown RBP12□□□□□ -0.49
VPS35-210ENST00000568784 DMRTA1Q5VZB9 504 aa12□□□□□ -0.49
VPS35-210ENST00000568784 FAM214BQ7L5A3 538 aa12□□□□□ -0.49
VPS35-210ENST00000568784 LHFPL4Q7Z7J7 247 aa12□□□□□ -0.49
VPS35-210ENST00000568784 OPN3Q9H1Y3 402 aaPredicted RBP12□□□□□ -0.49
VPS35-210ENST00000568784 ZNRD1Q9P1U0 126 aa12□□□□□ -0.49
VPS35-210ENST00000568784 J3QR06 171 aa12□□□□□ -0.49
VPS35-210ENST00000568784 TDGF1P3P51864 188 aa12□□□□□ -0.49
VPS35-210ENST00000568784 GMPPAQ96IJ6 420 aaPredicted RBP12□□□□□ -0.49
VPS35-210ENST00000568784 TMEM68Q96MH6 324 aa12□□□□□ -0.49
VPS35-210ENST00000568784 HNRNPA3P51991 378 aaKnown RBP11.99□□□□□ -0.49
VPS35-210ENST00000568784 ZPBPQ9BS86 351 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 PARD6GQ9BYG4 376 aaPredicted RBP11.99□□□□□ -0.49
VPS35-210ENST00000568784 HSBP1O75506 76 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 TYMSP04818 313 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 NPSP0C0P6 89 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 ST6GALNAC3Q8NDV1 305 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 OR2V2Q96R30 315 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 NABP2Q9BQ15 211 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 GNB4Q9HAV0 340 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 GFRA3O60609 400 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 MPDU1O75352 247 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 FOXL1Q12952 345 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 MORN2Q502X0 79 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 SPATA45Q537H7 98 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 TRAT1Q6PIZ9 186 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 C11orf42Q8N5U0 333 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 ZNF439Q8NDP4 499 aa11.99□□□□□ -0.49
VPS35-210ENST00000568784 EAF1Q96JC9 268 aaPredicted RBP11.99□□□□□ -0.49
VPS35-210ENST00000568784 BRS3P32247 399 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 UBE2L3P68036 154 aaKnown RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 UTF1Q5T230 341 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 RNASEKQ6P5S7 137 aaKnown RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 INO80CQ6PI98 192 aaPredicted RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 SS18L1O75177 396 aaPredicted RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 PAFAH1B2P68402 229 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 MMDQ15546 238 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 ARSJQ5FYB0 599 aaPredicted RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 BLNKQ8WV28 456 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 TMEM208Q9BTX3 173 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 CALYQ9NYX4 217 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 OR51B2Q9Y5P1 312 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 ADAMTS20P59510 1910 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 USF1P22415 310 aaPredicted RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 OR4A47Q6IF82 309 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 CENPVQ7Z7K6 275 aaPredicted RBP11.98□□□□□ -0.49
VPS35-210ENST00000568784 SLC45A2Q9UMX9 530 aa11.98□□□□□ -0.49
VPS35-210ENST00000568784 K7EN84 100 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 HINT1P49773 126 aaPredicted RBP11.97□□□□□ -0.49
VPS35-210ENST00000568784 MFAP2P55001 183 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 Q56UQ5 140 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 ERASQ7Z444 233 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 LINC00479Q96M42 142 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 IGHV3-21A0A0B4J1V1 117 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 H3BTX0 84 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 ZNF134P52741 427 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 IBA57Q5T440 356 aaKnown RBP11.97□□□□□ -0.49
VPS35-210ENST00000568784 GP6Q9HCN6 339 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 IL19Q9UHD0 177 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 SH3BGRL2Q9UJC5 107 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 NAV3Q8IVL0 2385 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 NKX2-8O15522 239 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 UBALD2Q8IYN6 164 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 ITLN1Q8WWA0 313 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 DIRC2Q96SL1 478 aa11.97□□□□□ -0.49
VPS35-210ENST00000568784 MUC3AQ02505 3323 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 LNP1A1A4G5 178 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 CD99P14209 185 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 PDLIM4P50479 330 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 LCN12Q6JVE5 192 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 OR9G1Q8NH87 305 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 CCL13Q99616 98 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 CDX2Q99626 313 aaPredicted RBP11.96□□□□□ -0.49
VPS35-210ENST00000568784 COMMD5Q9GZQ3 224 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 NRN1Q9NPD7 142 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 SIAH2O43255 324 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 GPR6P46095 362 aaPredicted RBP11.96□□□□□ -0.49
VPS35-210ENST00000568784 HSPE1P61604 102 aaKnown RBP11.96□□□□□ -0.49
VPS35-210ENST00000568784 H1FXQ92522 213 aaKnown RBP11.96□□□□□ -0.49
VPS35-210ENST00000568784 MIEN1Q9BRT3 115 aa11.96□□□□□ -0.49
VPS35-210ENST00000568784 TRGV10A0A0A0MS01 117 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 TRAV5A0A0B4J249 113 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 MGST3O14880 152 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 TMPRSS2O15393 492 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 PROP1O75360 226 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 RELBQ01201 579 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 SRSF6Q13247 344 aaKnown RBP11.96□□□□□ -0.5
VPS35-210ENST00000568784 C11orf53Q8IXP5 236 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 Q8TCH9 128 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 NEU1Q99519 415 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 ZNF355PQ9NSJ1 428 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 TECRQ9NZ01 308 aaKnown RBP11.96□□□□□ -0.5
VPS35-210ENST00000568784 FBXL7Q9UJT9 491 aa11.96□□□□□ -0.5
VPS35-210ENST00000568784 WNT2P09544 360 aa11.95□□□□□ -0.5
VPS35-210ENST00000568784 DUX4L9Q6RFH8 374 aaPredicted RBP11.95□□□□□ -0.5
VPS35-210ENST00000568784 AKAP6Q13023 2319 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms