RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 SCO1O75880 301 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 CST7O76096 145 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 NDUFB4O95168 129 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 KRASP01116 189 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 IGKV1-39P01597 117 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 IGKV1-5P01602 117 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 IGHV1-46P01743 117 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 IGKV1D-39P04432 117 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 CD55P08174 381 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 OR4A8P0C604 315 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 CD80P33681 288 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 ARHGDIBP52566 201 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 DVL1P1P54792 670 aaPredicted RBP4.81□□□□□ -1.64
VPS39-209ENST00000568029 PAX9P55771 341 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 EDDM3BP56851 147 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 BTN1A1Q13410 526 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 CLINT1Q14677 625 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 ATP6V1FQ16864 119 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 MORN2Q502X0 79 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 DPPA3Q6W0C5 159 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 Q6ZRG5 221 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 H2BFWTQ7Z2G1 175 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 C1orf87Q8N0U7 546 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 HSD17B11Q8NBQ5 300 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 OR5C1Q8NGR4 320 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 LYPD6BQ8NI32 183 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 SDSLQ96GA7 329 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 CIB3Q96Q77 187 aaPredicted RBP4.81□□□□□ -1.64
VPS39-209ENST00000568029 CLCC1Q96S66 551 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 PBDC1Q9BVG4 233 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 SEC11CQ9BY50 192 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 PARP12Q9H0J9 701 aaKnown RBP4.81□□□□□ -1.64
VPS39-209ENST00000568029 SMDT1Q9H4I9 107 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 C19orf12Q9NSK7 152 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 UQCC1Q9NVA1 299 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 CALYQ9NYX4 217 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 PSG11Q9UQ72 335 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 GAB2Q9UQC2 676 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 RNF115Q9Y4L5 304 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 DNAJC13O75165 2243 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 FREM1Q5H8C1 2179 aa4.81□□□□□ -1.64
VPS39-209ENST00000568029 IGHV3-43A0A0B4J1X8 118 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 TRAV38-1A0A0B4J264 116 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 A0A0G2JRQ6 117 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 KBTBD11-OT1A0A1B0GTJ5 212 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 hADV38S2A0JD32 116 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ZNF729A6NN14 1252 aaPredicted RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 C17orf98A8MV24 154 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 DEFB108AA8MXU0 73 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 RBFOX2O43251 390 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS39-209ENST00000568029 SNAPINO95295 136 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 TOMM40O96008 361 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 HPRT1P00492 218 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 HBE1P02100 147 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 TFF1P04155 84 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 CD5P06127 495 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 OR8U8P0C7N1 319 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 IGHV3-43DP0DP04 118 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 IAPPP10997 89 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 EDN2P20800 178 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ATP6V0CP27449 155 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 SSTR5P35346 364 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ASCL1P50553 236 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 UBE2KP61086 200 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ERVK-16P61578 105 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 RPL30P62888 115 aaKnown RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 TNFRSF9Q07011 255 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 BSPH1Q075Z2 132 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ZNF616Q08AN1 781 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ZNF816Q0VGE8 651 aaPredicted RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 EIF4EBP1Q13541 118 aaPredicted RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 ADIPOQQ15848 244 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 Q3ZCU0 254 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 C10orf91Q5T1B1 145 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 AKR1C8PQ5T2L2 129 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 TEX36Q5VZQ5 186 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 STUMQ69YW2 141 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 TMEM182Q6ZP80 229 aaPredicted RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 MED12LQ86YW9 2145 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 TPRX1Q8N7U7 411 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 ZNRF1Q8ND25 227 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 DEFB108BQ8NET1 73 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 OR10A7Q8NGE5 316 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 FAM213BQ8TBF2 198 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 CORO2AQ92828 525 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 RAB39BQ96DA2 213 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 URB1-AS1Q96HZ7 61 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 ADTRPQ96IZ2 230 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 WFIKKN1Q96NZ8 548 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 DCTN5Q9BTE1 182 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 RBKSQ9H477 322 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 CLN8Q9UBY8 286 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 CARHSP1Q9Y2V2 147 aaKnown RBP4.8□□□□□ -1.64
VPS39-209ENST00000568029 MGAM2Q2M2H8 2515 aa4.8□□□□□ -1.64
VPS39-209ENST00000568029 PPIAL4EA0A075B759 164 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 A0A1B0GW64 132 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 CEBPZOSA8MTT3 80 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 PPIAL4DF5H284 164 aa4.79□□□□□ -1.64
VPS39-209ENST00000568029 M0R1X1 148 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms