RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TEX50A0A1B0GTY4 177 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 SERPINE2P07093 398 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 RPA2P15927 270 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 ZNF585BQ52M93 769 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 PLET1Q6UQ28 207 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 BTNL8Q6UX41 500 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 VN1R17PQ8TDU5 208 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 MARC2Q969Z3 335 aa12.03□□□□□ -0.48
CLN3-229ENST00000567963 ZNF2Q9BSG1 426 aaPredicted RBP12.03□□□□□ -0.48
CLN3-229ENST00000567963 ZNF436Q9C0F3 470 aaPredicted RBP12.03□□□□□ -0.48
CLN3-229ENST00000567963 MRPL27Q9P0M9 148 aaKnown RBP12.03□□□□□ -0.48
CLN3-229ENST00000567963 EPPK1P58107 5090 aaKnown RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 TRAV25A0A0B4J276 109 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 IGHV3-35A0A0C4DH35 117 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 MARCH11A6NNE9 402 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 PGLYRP1O75594 196 aaPredicted RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 TRAPPC2P0DI81 140 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 TRAPPC2BP0DI82 140 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 F2RP25116 425 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 RPS19P39019 145 aaKnown RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 ELLP55199 621 aaPredicted RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 WT1-ASQ06250 92 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 UBE2NLQ5JXB2 153 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 THOC7Q6I9Y2 204 aaKnown RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 HSD17B13Q7Z5P4 300 aaPredicted RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 GDPD1Q8N9F7 314 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 MOB3AQ96BX8 217 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 MRPS26Q9BYN8 205 aaKnown RBP12.02□□□□□ -0.48
CLN3-229ENST00000567963 ANAPC10Q9UM13 185 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 UFC1Q9Y3C8 167 aa12.02□□□□□ -0.48
CLN3-229ENST00000567963 CYB5BO43169 146 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 PMP2P02689 132 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 RLN1P04808 185 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 OR13C7P0DN81 318 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 NAT1P18440 290 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 ERVK-16P61578 105 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 RBPMS2Q6ZRY4 209 aaKnown RBP12.02□□□□□ -0.49
CLN3-229ENST00000567963 OR1L8Q8NGR8 309 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 FCAMRQ8WWV6 532 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 NDUFA4L2Q9NRX3 87 aa12.02□□□□□ -0.49
CLN3-229ENST00000567963 TGOLN2O43493 480 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 LPAR6P43657 344 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 TAS2R20P59543 309 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 TMEM69Q5SWH9 247 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 SLC25A24Q6NUK1 477 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 CADM3Q8N126 398 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 SAMD12Q8N8I0 201 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 DGCR14Q96DF8 476 aaKnown RBP12.01□□□□□ -0.49
CLN3-229ENST00000567963 GGTLC1Q9BX51 225 aa12.01□□□□□ -0.49
CLN3-229ENST00000567963 LOC102724200A0A096LPH7 203 aaPredicted RBP12□□□□□ -0.49
CLN3-229ENST00000567963 OR2T8A6NH00 312 aa12□□□□□ -0.49
CLN3-229ENST00000567963 KRASP01116 189 aa12□□□□□ -0.49
CLN3-229ENST00000567963 TAS2R46P59540 309 aa12□□□□□ -0.49
CLN3-229ENST00000567963 CMTM1Q8IZ96 169 aa12□□□□□ -0.49
CLN3-229ENST00000567963 OR1L6Q8NGR2 347 aa12□□□□□ -0.49
CLN3-229ENST00000567963 OR5H2Q8NGV7 314 aa12□□□□□ -0.49
CLN3-229ENST00000567963 BSCL2Q96G97 398 aaPredicted RBP12□□□□□ -0.49
CLN3-229ENST00000567963 OVOL2Q9BRP0 275 aa12□□□□□ -0.49
CLN3-229ENST00000567963 C5orf66Q9H5L9 145 aa12□□□□□ -0.49
CLN3-229ENST00000567963 JTBO76095 146 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 PRSS3P35030 304 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 G6PCP35575 357 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 MFAP2P55001 183 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 LSM3P62310 102 aaKnown RBP11.99□□□□□ -0.49
CLN3-229ENST00000567963 LYSMD2Q8IV50 215 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 OR2C3Q8N628 320 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 OR6F1Q8NGZ6 308 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 TMEM190Q8WZ59 177 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 LSM10Q969L4 123 aaKnown RBP11.99□□□□□ -0.49
CLN3-229ENST00000567963 YIPF6Q96EC8 236 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 ATP6V0BQ99437 205 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 VCX3AQ9NNX9 186 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 NSG2Q9Y328 171 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 OR51B2Q9Y5P1 312 aa11.99□□□□□ -0.49
CLN3-229ENST00000567963 F11RQ9Y624 299 aaKnown RBP11.99□□□□□ -0.49
CLN3-229ENST00000567963 GPR31O00270 319 aa11.98□□□□□ -0.49
CLN3-229ENST00000567963 SPSB3Q6PJ21 355 aa11.98□□□□□ -0.49
CLN3-229ENST00000567963 SCARB1Q8WTV0 552 aa11.98□□□□□ -0.49
CLN3-229ENST00000567963 SPAG8Q99932 426 aaPredicted RBP11.98□□□□□ -0.49
CLN3-229ENST00000567963 HINT2Q9BX68 163 aa11.98□□□□□ -0.49
CLN3-229ENST00000567963 FXYD6Q9H0Q3 95 aa11.98□□□□□ -0.49
CLN3-229ENST00000567963 DAZ1Q9NQZ3 744 aaKnown RBP11.98□□□□□ -0.49
CLN3-229ENST00000567963 C21orf62Q9NYP8 219 aa11.98□□□□□ -0.49
CLN3-229ENST00000567963 IGHV3-21A0A0B4J1V1 117 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 F8W735 103 aaPredicted RBP11.97□□□□□ -0.49
CLN3-229ENST00000567963 NDUFA4O00483 81 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 TSPAN4O14817 238 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 SNAPC5O75971 98 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 HLA-DMAP28067 261 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 HRH1P35367 487 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 ALDH3B2P48448 385 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 SLC38A6Q8IZM9 456 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 CHRDL1Q9BU40 450 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 FKBP11Q9NYL4 201 aa11.97□□□□□ -0.49
CLN3-229ENST00000567963 PLECQ15149 4684 aaKnown RBP11.96□□□□□ -0.49
CLN3-229ENST00000567963 K7EIM0 57 aa11.96□□□□□ -0.49
CLN3-229ENST00000567963 OR5B3Q8NH48 314 aa11.96□□□□□ -0.49
CLN3-229ENST00000567963 SLC25A46Q96AG3 418 aa11.96□□□□□ -0.49
CLN3-229ENST00000567963 TMEM56Q96MV1 263 aa11.96□□□□□ -0.49
CLN3-229ENST00000567963 TMEM14BQ9NUH8 114 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms