RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 NPBQ8NG41 125 aa10.58□□□□□ -0.72
CLK3-218ENST00000566926 OR4A5Q8NH83 315 aa10.58□□□□□ -0.72
CLK3-218ENST00000566926 OR1S1Q8NH92 325 aa10.58□□□□□ -0.72
CLK3-218ENST00000566926 GPR146Q96CH1 333 aa10.58□□□□□ -0.72
CLK3-218ENST00000566926 RHOVQ96L33 236 aa10.58□□□□□ -0.72
CLK3-218ENST00000566926 NOL4LQ96MY1 436 aaPredicted RBP10.58□□□□□ -0.72
CLK3-218ENST00000566926 CACNG5Q9UF02 275 aa10.58□□□□□ -0.72
CLK3-218ENST00000566926 NOTCH3Q9UM47 2321 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 E5RGE8 158 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 G3V3Q6 166 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 DEDDO75618 318 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 NDUFA3O95167 84 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 SPDEFO95238 335 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 PF4V1P10720 104 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 LYL1P12980 280 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 S100A10P60903 97 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 ID3Q02535 119 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 ZNF345Q14585 488 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 C5orf64Q2M2E5 130 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 LRRC37A5PQ49AS3 106 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 TEX38Q6PEX7 206 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 INO80EQ8NBZ0 244 aaPredicted RBP10.57□□□□□ -0.72
CLK3-218ENST00000566926 OR52E5Q8NH55 327 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 OR4A16Q8NH70 328 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 HARBI1Q96MB7 349 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 TSNAXQ99598 290 aaKnown RBP10.57□□□□□ -0.72
CLK3-218ENST00000566926 TMEM140Q9NV12 185 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 FKBP11Q9NYL4 201 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 BET1LQ9NYM9 111 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 ZNF580Q9UK33 172 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 NSG2Q9Y328 171 aa10.57□□□□□ -0.72
CLK3-218ENST00000566926 FXYD6-FXYD2A0A087WZ82 144 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 A0A1W2PRX2 142 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 ADARB2-AS1A8MUL3 147 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 WRBO00258 174 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 HLA-DRB1P01911 266 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 MBPP02686 304 aaPredicted RBP10.56□□□□□ -0.72
CLK3-218ENST00000566926 IGKV1-16P04430 117 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 IGF1P05019 195 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 LINC00205P59089 165 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 RAB32Q13637 225 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 PLGLAQ15195 96 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 VMA21Q3ZAQ7 101 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 TCTEX1D4Q5JR98 221 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 HIST2H2BDQ6DRA6 164 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 ZNF329Q86UD4 541 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 ZNF546Q86UE3 836 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 ZNF429Q86V71 674 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 WDR89Q96FK6 387 aaPredicted RBP10.56□□□□□ -0.72
CLK3-218ENST00000566926 RAB40CQ96S21 281 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 MBD2Q9UBB5 411 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 LINC00527Q9UJ94 153 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 PRNDQ9UKY0 176 aa10.56□□□□□ -0.72
CLK3-218ENST00000566926 CMYA5Q8N3K9 4069 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 TRAV14DV4A0A0A6YYC5 116 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 A0A0D9SG52 128 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 A0A0G2JRQ6 117 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 LINC01548A6NM66 108 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 SMLR1H3BR10 107 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 K7EPK0 472 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 RRHO14718 337 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 RBMXL2O75526 392 aaKnown RBP10.55□□□□□ -0.72
CLK3-218ENST00000566926 SCAF4O95104 1147 aaKnown RBP10.55□□□□□ -0.72
CLK3-218ENST00000566926 SCGB1D2O95969 90 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 PF4P02776 101 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 UBE2KP61086 200 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 RPS16P62249 146 aaKnown RBP10.55□□□□□ -0.72
CLK3-218ENST00000566926 OR2F1Q13607 317 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 PDLIM3Q53GG5 364 aaPredicted RBP10.55□□□□□ -0.72
CLK3-218ENST00000566926 CXorf66Q5JRM2 361 aaPredicted RBP10.55□□□□□ -0.72
CLK3-218ENST00000566926 OR4A47Q6IF82 309 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 C10orf99Q6UWK7 81 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 CIB3Q96Q77 187 aaPredicted RBP10.55□□□□□ -0.72
CLK3-218ENST00000566926 HSPB9Q9BQS6 159 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 HSPB7Q9UBY9 170 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 ZNF257Q9Y2Q1 563 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 NOTCH1P46531 2555 aa10.55□□□□□ -0.72
CLK3-218ENST00000566926 L7N2F9 121 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 ELANEP08246 267 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 CNTFRP26992 372 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 P2RY1P47900 373 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 TAS2R30P59541 319 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 RPL23AP62750 156 aaKnown RBP10.54□□□□□ -0.72
CLK3-218ENST00000566926 VAMP2P63027 116 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 TNFRSF9Q07011 255 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 FOXE3Q13461 319 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 Q5BKY6 102 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 ACOT7LQ6ZUV0 252 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 PUSL1Q8N0Z8 303 aaKnown RBP10.54□□□□□ -0.72
CLK3-218ENST00000566926 TEX45Q8NA69 505 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 OR11H4Q8NGC9 324 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 DCUN1D4Q92564 292 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 RITA1Q96K30 269 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 CLCC1Q96S66 551 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 TNFSF18Q9UNG2 199 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 FOXA2Q9Y261 457 aaPredicted RBP10.54□□□□□ -0.72
CLK3-218ENST00000566926 WSB1Q9Y6I7 421 aa10.54□□□□□ -0.72
CLK3-218ENST00000566926 IGHV7-81A0A0B4J1V7 117 aa10.53□□□□□ -0.72
CLK3-218ENST00000566926 C15orf61A6NNL5 157 aa10.53□□□□□ -0.72
CLK3-218ENST00000566926 ARPC5O15511 151 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms