RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ANKRD55Q3KP44 614 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 SLC25A42Q86VD7 318 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 OR4F17Q8NGA8 305 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 UBE2E2Q96LR5 201 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 OR4F4Q96R69 305 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 HINT2Q9BX68 163 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 NDUFA4L2Q9NRX3 87 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 NOTCH3Q9UM47 2321 aa15.16■□□□□ 0.02
CLN3-225ENST00000566824 NOTCH1P46531 2555 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 I3L521 148 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 UPK1BO75841 260 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 TRAPPC2P0DI81 140 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 TRAPPC2BP0DI82 140 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 PSMB6P28072 239 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 WT1-ASQ06250 92 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 SPINK9Q5DT21 86 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 CENPSQ8N2Z9 138 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 OR1L8Q8NGR8 309 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 C4orf3Q8WVX3 66 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 RBPMSQ93062 196 aaKnown RBP15.15■□□□□ 0.02
CLN3-225ENST00000566824 GPR146Q96CH1 333 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 PRNDQ9UKY0 176 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 DMRT1Q9Y5R6 373 aa15.15■□□□□ 0.02
CLN3-225ENST00000566824 NPIPB5A8MRT5 1133 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 H3BUA1 57 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 CTRB1P17538 263 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 ANXA7P20073 488 aaKnown RBP15.14■□□□□ 0.01
CLN3-225ENST00000566824 TMEM128Q5BJH2 165 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 CTRB2Q6GPI1 263 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 LYZL2Q7Z4W2 148 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 SLC35G3Q8N808 338 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 OR4A16Q8NH70 328 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 FANCD2OSQ96PS1 177 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 TSC22D3Q99576 134 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 KCNIP3Q9Y2W7 256 aa15.14■□□□□ 0.01
CLN3-225ENST00000566824 TRBV9A0A0B4J1U6 114 aa15.13■□□□□ 0.01
CLN3-225ENST00000566824 BRI3O95415 125 aa15.13■□□□□ 0.01
CLN3-225ENST00000566824 CRYGCP07315 174 aa15.13■□□□□ 0.01
CLN3-225ENST00000566824 VAMP1P23763 118 aa15.13■□□□□ 0.01
CLN3-225ENST00000566824 P2RX4Q99571 388 aa15.13■□□□□ 0.01
CLN3-225ENST00000566824 SLA2Q9H6Q3 261 aa15.13■□□□□ 0.01
CLN3-225ENST00000566824 CCL24O00175 119 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 ST8SIA3O43173 380 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 SFT2D2O95562 160 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 OR13C7P0DN81 318 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 SLC6A1P30531 599 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 RHOGP84095 191 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 ASAH1Q13510 395 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 MRPL41Q8IXM3 137 aaKnown RBP15.12■□□□□ 0.01
CLN3-225ENST00000566824 LINC00482Q8N8I6 264 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 RRNAD1Q96FB5 475 aaKnown RBP15.12■□□□□ 0.01
CLN3-225ENST00000566824 ZNF257Q9Y2Q1 563 aa15.12■□□□□ 0.01
CLN3-225ENST00000566824 OR2J3O76001 311 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 ATG12O94817 140 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 NDUFB8O95169 186 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 PF4P02776 101 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 TCRBP04435 133 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 LGALS1P09382 135 aaKnown RBP15.11■□□□□ 0.01
CLN3-225ENST00000566824 MFAP2P55001 183 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 HSPE1P61604 102 aaKnown RBP15.11■□□□□ 0.01
CLN3-225ENST00000566824 RUNX1Q01196 453 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 OR5B3Q8NH48 314 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 RNASE11Q8TAA1 199 aaKnown RBP15.11■□□□□ 0.01
CLN3-225ENST00000566824 IL22RA2Q969J5 263 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 FKBP11Q9NYL4 201 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 CACNG5Q9UF02 275 aa15.11■□□□□ 0.01
CLN3-225ENST00000566824 C9orf170A2RU37 121 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 MYCNOSP40205 109 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 NMSQ5H8A3 153 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 C11orf87Q6NUJ2 197 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 ZNF429Q86V71 674 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 LGI3Q8N145 548 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 OR11H1Q8NG94 326 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 LSM10Q969L4 123 aaKnown RBP15.1■□□□□ 0.01
CLN3-225ENST00000566824 C20orf85Q9H1P6 137 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 S4R3C0 116 aa15.1■□□□□ 0.01
CLN3-225ENST00000566824 IGLV11-55A0A075B6I3 123 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 TRAV6A0A075B6T7 132 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 IGHV4OR15-8A0A075B7B6 117 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 A0A087WW49 117 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 ANKRD34BA5PLL1 514 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 TRBV12-3P01733 135 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 OR4E1P0C645 316 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 ANXA3P12429 323 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 PRCDQ00LT1 54 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 FHL3Q13643 280 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 KLK9Q2XQG4 91 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 OR1N2Q8NGR9 330 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 SRSF8Q9BRL6 282 aaKnown RBP15.09■□□□□ 0.01
CLN3-225ENST00000566824 FBXL7Q9UJT9 491 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 KLK9Q9UKQ9 250 aa15.09■□□□□ 0.01
CLN3-225ENST00000566824 A0A0B4J2A0 478 aa15.08■□□□□ 0
CLN3-225ENST00000566824 C13orf42A0A1B0GVH6 325 aa15.08■□□□□ 0
CLN3-225ENST00000566824 NXPH3O95157 252 aa15.08■□□□□ 0
CLN3-225ENST00000566824 DHRS2Q13268 280 aa15.08■□□□□ 0
CLN3-225ENST00000566824 AARDQ4LEZ3 155 aa15.08■□□□□ 0
CLN3-225ENST00000566824 FAM219AQ8IW50 185 aa15.08■□□□□ 0
CLN3-225ENST00000566824 LRTM2Q8N967 370 aa15.08■□□□□ 0
CLN3-225ENST00000566824 WFDC9Q8NEX5 89 aa15.08■□□□□ 0
CLN3-225ENST00000566824 OR52B4Q8NGK2 314 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms