RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 OR2J3O76001 311 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 LGALS1P09382 135 aaKnown RBP7.08□□□□□ -1.28
VPS35-206ENST00000565228 PSMB6P28072 239 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 MAS1LP35410 378 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 MYCNOSP40205 109 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 DHODHQ02127 395 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 TMEM267Q0VDI3 215 aaPredicted RBP7.08□□□□□ -1.28
VPS35-206ENST00000565228 SURF2Q15527 256 aaPredicted RBP7.08□□□□□ -1.28
VPS35-206ENST00000565228 ANKRD55Q3KP44 614 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 SPANXN2Q5MJ10 180 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 OR1N2Q8NGR9 330 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 VSTM2AQ8TAG5 236 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 ZFAND1Q8TCF1 268 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 DCUN1D4Q92564 292 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 DLX4Q92988 240 aaPredicted RBP7.08□□□□□ -1.28
VPS35-206ENST00000565228 BORCS5Q969J3 196 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 GPR146Q96CH1 333 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 CCDC140Q96MF4 163 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 PHB2Q99623 299 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 COA4Q9NYJ1 87 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 COPZ2Q9P299 210 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 TBC1D24Q9ULP9 559 aa7.08□□□□□ -1.28
VPS35-206ENST00000565228 ANKRD34BA5PLL1 514 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 MFSD2BA6NFX1 497 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 NPIPB5A8MRT5 1133 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 H3BUA1 57 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 CD40LGP29965 261 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 HOXD3P31249 432 aaPredicted RBP7.07□□□□□ -1.28
VPS35-206ENST00000565228 RHOGP84095 191 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 PPP1R1AQ13522 171 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 ZNF57Q68EA5 555 aaPredicted RBP7.07□□□□□ -1.28
VPS35-206ENST00000565228 ZNF343Q6P1L6 599 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 TMEM65Q6PI78 240 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 IL34Q6ZMJ4 242 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 ADAMTSL5Q6ZMM2 481 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 GALNT14Q96FL9 552 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 TMEM56Q96MV1 263 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 SPIN2AQ99865 258 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 SPIN2BQ9BPZ2 258 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 ZNF355PQ9NSJ1 428 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 PTTG2Q9NZH5 202 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 OR51B2Q9Y5P1 312 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 TMEM56-RWDD3S4R434 201 aa7.07□□□□□ -1.28
VPS35-206ENST00000565228 IGHV3-21A0A0B4J1V1 117 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 BMPR1BO00238 502 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 ST8SIA3O43173 380 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 NDUFB6O95139 128 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 HLA-AP01891 365 aaKnown RBP7.06□□□□□ -1.28
VPS35-206ENST00000565228 PF4P02776 101 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 FGF2P09038 288 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 AKR1C4P17516 323 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 DEFA6Q01524 100 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 TRIM16LQ309B1 348 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 AARDQ4LEZ3 155 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 PDLIM3Q53GG5 364 aaPredicted RBP7.06□□□□□ -1.28
VPS35-206ENST00000565228 NMSQ5H8A3 153 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 LYZL2Q7Z4W2 148 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 TMED4Q7Z7H5 227 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 HAPLN4Q86UW8 402 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 FAM219AQ8IW50 185 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 SLC35G3Q8N808 338 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 TMEM170AQ8WVE7 144 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 TMEM68Q96MH6 324 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 SLA2Q9H6Q3 261 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 SCP2D1Q9UJQ7 156 aa7.06□□□□□ -1.28
VPS35-206ENST00000565228 C14orf166Q9Y224 244 aaKnown RBP7.06□□□□□ -1.28
VPS35-206ENST00000565228 MPTX1A8MV57 137 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 PPP5D1E7EU14 171 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 LINC01619G3V211 115 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 K7EIM0 57 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 ACTL6BO94805 426 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 NXPH3O95157 252 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 HSPB1P04792 205 aaKnown RBP7.05□□□□□ -1.28
VPS35-206ENST00000565228 SERPINE2P07093 398 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 TRAPPC2P0DI81 140 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 TRAPPC2BP0DI82 140 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 OR13C7P0DN81 318 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 ANXA7P20073 488 aaKnown RBP7.05□□□□□ -1.28
VPS35-206ENST00000565228 CD33P20138 364 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 RAB25P57735 213 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 ERVK-16P61578 105 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 ZNF616Q08AN1 781 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 MLANAQ16655 118 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 C15orf32Q32M92 178 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 TMEM268Q5VZI3 342 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 PVRIGQ6DKI7 326 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 H2BFWTQ7Z2G1 175 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 SLC25A42Q86VD7 318 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 OR2C3Q8N628 320 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 CCDC71LQ8N9Z2 235 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 OR1L8Q8NGR8 309 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 HINT2Q9BX68 163 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 ZC4H2Q9NQZ6 224 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 MRPL36Q9P0J6 103 aaKnown RBP7.05□□□□□ -1.28
VPS35-206ENST00000565228 FBXL7Q9UJT9 491 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 ZNF257Q9Y2Q1 563 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 SORL1Q92673 2214 aa7.05□□□□□ -1.28
VPS35-206ENST00000565228 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.04□□□□□ -1.28
VPS35-206ENST00000565228 WI2-2373I1.2A0A1W2PRP0 233 aa7.04□□□□□ -1.28
VPS35-206ENST00000565228 CREBL2O60519 120 aaPredicted RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms