RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SERPINE2P07093 398 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 TRAPPC2P0DI81 140 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 TRAPPC2BP0DI82 140 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 CBLN1P23435 193 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 RCVRNP35243 200 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 G6PCP35575 357 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 HAGHQ16775 308 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 THOC7Q6I9Y2 204 aaKnown RBP11.2□□□□□ -0.62
CLN3-213ENST00000565047 UNQ9165/PRO28630Q6UXU0 137 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 LHFPL1Q86WI0 220 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 LAX1Q8IWV1 398 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 CMTM1Q8IZ96 169 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 GDPD1Q8N9F7 314 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 ZNF414Q96IQ9 312 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 CXorf58Q96LI9 332 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 ABHD1Q96SE0 405 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 LYSTQ99698 3801 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 EDA2RQ9HAV5 297 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 NSG2Q9Y328 171 aa11.2□□□□□ -0.62
CLN3-213ENST00000565047 F8W735 103 aaPredicted RBP11.19□□□□□ -0.62
CLN3-213ENST00000565047 CD7P09564 240 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 C8orf88P0DMB2 117 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 DEFA4P12838 97 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 ZNF182P17025 639 aaPredicted RBP11.19□□□□□ -0.62
CLN3-213ENST00000565047 PHLDA2Q53GA4 152 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 GPR107Q5VW38 600 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 OR1L8Q8NGR8 309 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 CACNG8Q8WXS5 425 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 SEC22AQ96IW7 307 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 CITED4Q96RK1 184 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 ZNF436Q9C0F3 470 aaPredicted RBP11.19□□□□□ -0.62
CLN3-213ENST00000565047 MIXL1Q9H2W2 232 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 ZMAT4Q9H898 229 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 TMEM14BQ9NUH8 114 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 TECRQ9NZ01 308 aaKnown RBP11.19□□□□□ -0.62
CLN3-213ENST00000565047 KLK11Q9UBX7 282 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 MLXQ9UH92 298 aa11.19□□□□□ -0.62
CLN3-213ENST00000565047 TPPPO94811 219 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 OR13C7P0DN81 318 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 LPCAT3Q6P1A2 487 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 HSD17B13Q7Z5P4 300 aaPredicted RBP11.18□□□□□ -0.62
CLN3-213ENST00000565047 TBC1D26Q86UD7 250 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 GTSCR1Q86UQ5 136 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 MUC7Q8TAX7 377 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 VN1R17PQ8TDU5 208 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 OR51B2Q9Y5P1 312 aa11.18□□□□□ -0.62
CLN3-213ENST00000565047 F11RQ9Y624 299 aaKnown RBP11.18□□□□□ -0.62
CLN3-213ENST00000565047 HYDINQ4G0P3 5121 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 C15orf61A6NNL5 157 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 K7EIM0 57 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 M0QYG6 137 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 ERVK-16P61578 105 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 RND3P61587 244 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 TSPAN5P62079 268 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 CASC10Q5T4H9 136 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 MZT2AQ6P582 158 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 SLC38A6Q8IZM9 456 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 OR5B3Q8NH48 314 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 OR52I2Q8NH67 350 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 LSM10Q969L4 123 aaKnown RBP11.17□□□□□ -0.62
CLN3-213ENST00000565047 WDR89Q96FK6 387 aaPredicted RBP11.17□□□□□ -0.62
CLN3-213ENST00000565047 ATP6V0BQ99437 205 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 NEURL2Q9BR09 285 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 MTFP1Q9UDX5 166 aa11.17□□□□□ -0.62
CLN3-213ENST00000565047 CD3DP04234 171 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 P0C879 139 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 GPR183P32249 361 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 FAM106AQ4KMX7 169 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 TM4SF20Q53R12 229 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 TMEM61Q8N0U2 210 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 UXS1Q8NBZ7 420 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 AP3S1Q92572 193 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 MRGPRFQ96AM1 343 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 WFDC10AQ9H1F0 79 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 THYN1Q9P016 225 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 EXTL2Q9UBQ6 330 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 PRNDQ9UKY0 176 aa11.16□□□□□ -0.62
CLN3-213ENST00000565047 RBMY1BA6NDE4 496 aaKnown RBP11.15□□□□□ -0.62
CLN3-213ENST00000565047 RBMY1EA6NEQ0 496 aaKnown RBP11.15□□□□□ -0.62
CLN3-213ENST00000565047 FAM25AB3EWG3 89 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 FAM25CB3EWG5 89 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 FAM25GB3EWG6 89 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 CD74P04233 296 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 RBMY1DP0C7P1 496 aaKnown RBP11.15□□□□□ -0.62
CLN3-213ENST00000565047 ADMP35318 185 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 ELLP55199 621 aaPredicted RBP11.15□□□□□ -0.62
CLN3-213ENST00000565047 CD81P60033 236 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 SPCS2Q15005 226 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 DEFB125Q8N687 156 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 OR4D10Q8NGI6 311 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 DYNLRB2Q8TF09 96 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 SCARB1Q8WTV0 552 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 MRPS26Q9BYN8 205 aaKnown RBP11.15□□□□□ -0.62
CLN3-213ENST00000565047 PLEKHA3Q9HB20 300 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 FKBP11Q9NYL4 201 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 SELENOKQ9Y6D0 94 aa11.15□□□□□ -0.62
CLN3-213ENST00000565047 ZNF320A2RRD8 509 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 TGOLN2O43493 480 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 SNAPC5O75971 98 aa11.14□□□□□ -0.63
CLN3-213ENST00000565047 ZNF57Q68EA5 555 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms