RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 XIRP2A4UGR9 3374 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 TCF21O43680 179 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 PDE6DO43924 150 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 RPL30P62888 115 aaKnown RBP8.72□□□□□ -1.01
RNF40-204ENST00000563683 SUMO1P63165 101 aaKnown RBP8.72□□□□□ -1.01
RNF40-204ENST00000563683 SLC35B1P78383 322 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 ARL16Q0P5N6 197 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 FLYWCH2Q96CP2 140 aaKnown RBP8.72□□□□□ -1.01
RNF40-204ENST00000563683 PAM16Q9Y3D7 125 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 UBE2L3P68036 154 aaKnown RBP8.72□□□□□ -1.01
RNF40-204ENST00000563683 ZNF295-AS1Q8N0V1 137 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 OR5AU1Q8NGC0 362 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 CREBBPQ92793 2442 aa8.72□□□□□ -1.01
RNF40-204ENST00000563683 C20orf202A1L168 122 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 SS18L1O75177 396 aaPredicted RBP8.71□□□□□ -1.01
RNF40-204ENST00000563683 KIR2DL2P43627 348 aaPredicted RBP8.71□□□□□ -1.01
RNF40-204ENST00000563683 BPIFB3P59826 476 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 PCSK4Q6UW60 755 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 C11orf42Q8N5U0 333 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 TCTEX1D1Q8N7M0 179 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 OR4B1Q8NGF8 309 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 NPCDR1Q9BY65 106 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 PRNDQ9UKY0 176 aa8.71□□□□□ -1.01
RNF40-204ENST00000563683 H0Y8G0 127 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 CXorf1O96002 111 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 GLRXP35754 106 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 FAM216BQ8N7L0 139 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 ZNF439Q8NDP4 499 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 OR5B3Q8NH48 314 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 DNAJC4Q9NNZ3 241 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 JPT1Q9UK76 154 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 PPIAL4EA0A075B759 164 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 PPIAL4DF5H284 164 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 IFNL4K9M1U5 179 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 ARL14EPLP0DKL9 152 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 PPIAL4FP0DN26 164 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 CHRNB4P30926 498 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 KRTDAPP60985 99 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 ZNF146Q15072 292 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 TNXAQ16473 311 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 SAPCD1Q5SSQ6 148 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 BORCS7Q96B45 105 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 PPIAL4AQ9Y536 164 aa8.71□□□□□ -1.02
RNF40-204ENST00000563683 YLPM1P49750 1951 aaKnown RBP8.71□□□□□ -1.02
RNF40-204ENST00000563683 WNT2P09544 360 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 Q6P435 159 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 TMEM144Q7Z5S9 345 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 RPEQ96AT9 228 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 HSPB9Q9BQS6 159 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 ONECUT1Q9UBC0 465 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 HELTA6NFD8 242 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 MLNRO43193 412 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 PLAUP00749 431 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 RBP4P02753 201 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 CRISP2P16562 243 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 HSPE1P61604 102 aaKnown RBP8.7□□□□□ -1.02
RNF40-204ENST00000563683 PRSS8Q16651 343 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 TPTE2P1Q5T6R2 138 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 LINC01551Q86U37 167 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 HAPLN4Q86UW8 402 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 SIGLECL1Q8N7X8 197 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 VN1R17PQ8TDU5 208 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 TIMD4Q96H15 378 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 CHODLQ9H9P2 273 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 TECRQ9NZ01 308 aaKnown RBP8.7□□□□□ -1.02
RNF40-204ENST00000563683 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.7□□□□□ -1.021e-6■■■□□ 16.4
RNF40-204ENST00000563683 YPEL3P61236 119 aaPredicted RBP8.7□□□□□ -1.02
RNF40-204ENST00000563683 TIMM23BQ5SRD1 257 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 Q8NFD4 153 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 GATAD1Q8WUU5 269 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 CLCF1Q9UBD9 225 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 TRAV9-1A0A075B6T8 112 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 IGHV1-18A0A0C4DH31 117 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 C19orf67A6NJJ6 358 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 IGKV1D-33P01593 117 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 IGKV1-33P01594 117 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 PMCHP20382 165 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 GCSAMLQ5JQS6 135 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 C1orf174Q8IYL3 243 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 ZNF586Q9NXT0 402 aa8.7□□□□□ -1.02
RNF40-204ENST00000563683 ADMP35318 185 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 CAMPP49913 170 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 SELENOTP62341 195 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 Q6ZWC4 215 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 OR1B1Q8NGR6 318 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 ELOVL5Q9NYP7 299 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 ATG2AQ2TAZ0 1938 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 OTOGLQ3ZCN5 2332 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 YPEL1O60688 119 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 ESDP10768 282 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 TMEM11P17152 192 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 IER3P46695 156 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 HCP5Q6MZN7 132 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 MRPL54Q6P161 138 aaKnown RBP8.69□□□□□ -1.02
RNF40-204ENST00000563683 OR1L8Q8NGR8 309 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 YPEL2Q96QA6 119 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 SPG11Q96JI7 2443 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 MPDU1O75352 247 aa8.69□□□□□ -1.02
RNF40-204ENST00000563683 SLC25A5P05141 298 aaKnown RBP8.69□□□□□ -1.02
RNF40-204ENST00000563683 VSTM2AQ8TAG5 236 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms