RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 CD300EQ496F6 205 aaPredicted RBP12.77□□□□□ -0.37
CLK3-210ENST00000563112 LAX1Q8IWV1 398 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 SLC38A6Q8IZM9 456 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 OR10W1Q8NGF6 305 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 C15orf40Q8WUR7 153 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 TSC22D3Q99576 134 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 MRPS26Q9BYN8 205 aaKnown RBP12.77□□□□□ -0.37
CLK3-210ENST00000563112 FAM212BQ9NTI7 297 aaPredicted RBP12.77□□□□□ -0.37
CLK3-210ENST00000563112 FKBP11Q9NYL4 201 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 OR51B2Q9Y5P1 312 aa12.77□□□□□ -0.37
CLK3-210ENST00000563112 MFSD2BA6NFX1 497 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 C3orf84H3BNL1 204 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 PTBP1P26599 531 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLK3-210ENST00000563112 UCP3P55916 312 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 DEFB114Q30KQ6 69 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 ZNF585BQ52M93 769 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 SLC25A24Q6NUK1 477 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 GPR141Q7Z602 305 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 TBC1D26Q86UD7 250 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 GDPD1Q8N9F7 314 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 LSM10Q969L4 123 aaKnown RBP12.76□□□□□ -0.37
CLK3-210ENST00000563112 TMEM56Q96MV1 263 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 THAP7Q9BT49 309 aaPredicted RBP12.76□□□□□ -0.37
CLK3-210ENST00000563112 SLC2A8Q9NY64 477 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 EXTL2Q9UBQ6 330 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 PRNDQ9UKY0 176 aa12.76□□□□□ -0.37
CLK3-210ENST00000563112 TPPPO94811 219 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 SERPINE2P07093 398 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 GUCA2BQ16661 112 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 RNASE12Q5GAN4 147 aaKnown RBP12.75□□□□□ -0.37
CLK3-210ENST00000563112 RNASE10Q5GAN6 216 aaKnown RBP12.75□□□□□ -0.37
CLK3-210ENST00000563112 ADAMTSL5Q6ZMM2 481 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 VN1R17PQ8TDU5 208 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 TM2D3Q9BRN9 247 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 PALMDQ9NP74 551 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 NDUFA4L2Q9NRX3 87 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 NSG2Q9Y328 171 aa12.75□□□□□ -0.37
CLK3-210ENST00000563112 M0QYG6 137 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 CBLN1P23435 193 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 GPR183P32249 361 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 CD81P60033 236 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 WT1-ASQ06250 92 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 PLET1Q6UQ28 207 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 H2BFWTQ7Z2G1 175 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 OR1L6Q8NGR2 347 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 OR5B3Q8NH48 314 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 ZNF502Q8TBZ5 544 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 KLK11Q9UBX7 282 aa12.74□□□□□ -0.37
CLK3-210ENST00000563112 KMT2CQ8NEZ4 4911 aaKnown RBP12.74□□□□□ -0.37
CLK3-210ENST00000563112 HUWE1Q7Z6Z7 4374 aaKnown RBP12.74□□□□□ -0.37
CLK3-210ENST00000563112 ZNF785A8K8V0 405 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 A8MWP6 167 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 PGAM2P15259 253 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 TBPP20226 339 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 ARRDC1Q8N5I2 433 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 OR52I2Q8NH67 350 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 OR4A16Q8NH70 328 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 ZNF486Q96H40 463 aaPredicted RBP12.73□□□□□ -0.37
CLK3-210ENST00000563112 NEURL2Q9BR09 285 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 SPATA25Q9BR10 227 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 ZC4H2Q9NQZ6 224 aa12.73□□□□□ -0.37
CLK3-210ENST00000563112 F11RQ9Y624 299 aaKnown RBP12.73□□□□□ -0.37
CLK3-210ENST00000563112 C15orf61A6NNL5 157 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 RGS5O15539 181 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 HAGHQ16775 308 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 ZNF57Q68EA5 555 aaPredicted RBP12.72□□□□□ -0.37
CLK3-210ENST00000563112 UXS1Q8NBZ7 420 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 MUC7Q8TAX7 377 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 MARC2Q969Z3 335 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 TMEM14BQ9NUH8 114 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 MTFP1Q9UDX5 166 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 UFC1Q9Y3C8 167 aa12.72□□□□□ -0.37
CLK3-210ENST00000563112 TMEM213A2RRL7 107 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 TGOLN2O43493 480 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 CD3DP04234 171 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 EDN2P20800 178 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 ALDH3B2P48448 385 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 ELLP55199 621 aaPredicted RBP12.71□□□□□ -0.37
CLK3-210ENST00000563112 RND3P61587 244 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 CACNG8Q8WXS5 425 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 SEC22AQ96IW7 307 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 ATP6V0BQ99437 205 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 PLEKHA3Q9HB20 300 aa12.71□□□□□ -0.37
CLK3-210ENST00000563112 ATG12O94817 140 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 TAS2R19P59542 299 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 TM4SF20Q53R12 229 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 SPSB3Q6PJ21 355 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 SLC16A13Q7RTY0 426 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 TMEM229BQ8NBD8 167 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 ZFAND1Q8TCF1 268 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 WDR89Q96FK6 387 aaPredicted RBP12.7□□□□□ -0.38
CLK3-210ENST00000563112 BSCL2Q96G97 398 aaPredicted RBP12.7□□□□□ -0.38
CLK3-210ENST00000563112 CITED4Q96RK1 184 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 ABHD1Q96SE0 405 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 C21orf62Q9NYP8 219 aa12.7□□□□□ -0.38
CLK3-210ENST00000563112 MRPL27Q9P0M9 148 aaKnown RBP12.7□□□□□ -0.38
CLK3-210ENST00000563112 IGHV3-35A0A0C4DH35 117 aa12.69□□□□□ -0.38
CLK3-210ENST00000563112 OR2T8A6NH00 312 aa12.69□□□□□ -0.38
CLK3-210ENST00000563112 OR11H12B2RN74 326 aa12.69□□□□□ -0.38
CLK3-210ENST00000563112 CD7P09564 240 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms