RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 ARL6Q9H0F7 186 aa11.09□□□□□ -0.63
LDLR-213ENST00000560502 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.09□□□□□ -0.63
LDLR-213ENST00000560502 SLC35D1Q9NTN3 355 aa11.09□□□□□ -0.63
LDLR-213ENST00000560502 OR5AC2Q9NZP5 309 aa11.09□□□□□ -0.63
LDLR-213ENST00000560502 LSM5Q9Y4Y9 91 aaKnown RBP11.09□□□□□ -0.63
LDLR-213ENST00000560502 HILPDAQ9Y5L2 63 aa11.09□□□□□ -0.63
LDLR-213ENST00000560502 A0A0G2JRQ6 117 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 OOSP1A8MZH6 123 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 TAAR5O14804 337 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 BCL2L11O43521 198 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 SCAF4O95104 1147 aaKnown RBP11.08□□□□□ -0.64
LDLR-213ENST00000560502 KRASP01116 189 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 FGF2P09038 288 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 CT45A6P0DMU7 189 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 CT45A5P0DMU8 189 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 CT45A7P0DMV0 189 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 G6PCP35575 357 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 TAS2R30P59541 319 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 ARSJQ5FYB0 599 aaPredicted RBP11.08□□□□□ -0.64
LDLR-213ENST00000560502 C16orf82Q7Z2V1 217 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 SLC51BQ86UW2 128 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 TGIF2LXQ8IUE1 241 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 FOXRED2Q8IWF2 684 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 OR4P4Q8NGL7 312 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 RCL1Q9Y2P8 373 aaKnown RBP11.08□□□□□ -0.64
LDLR-213ENST00000560502 BOLA1Q9Y3E2 137 aa11.08□□□□□ -0.64
LDLR-213ENST00000560502 H0YJW9 148 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 BUB1B-PAK6H3BSN5 160 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 GAPDHP04406 335 aaKnown RBP11.07□□□□□ -0.64
LDLR-213ENST00000560502 PF4V1P10720 104 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 KRTAP10-11P60412 298 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 VAMP2P63027 116 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 EIF5AP63241 154 aaKnown RBP11.07□□□□□ -0.64
LDLR-213ENST00000560502 IFITM2Q01629 132 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 DMBX1Q8NFW5 382 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 ARPC5LQ9BPX5 153 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 NABP2Q9BQ15 211 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 MRPL20Q9BYC9 149 aaKnown RBP11.07□□□□□ -0.64
LDLR-213ENST00000560502 SLC25A31Q9H0C2 315 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 C11orf1Q9H5F2 150 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 HSPB7Q9UBY9 170 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 WASHC3Q9Y3C0 194 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 WSB1Q9Y6I7 421 aa11.07□□□□□ -0.64
LDLR-213ENST00000560502 WI2-2373I1.2A0A1W2PRP0 233 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 SYNGR2O43760 224 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 CRYZL1O95825 349 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 IFNA7P01567 189 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 HTR1DP28221 377 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 RPL12P30050 165 aaKnown RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 RPL23AP62750 156 aaKnown RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 BAXQ07812 192 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 EGFEM1PQ0D2K5 195 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 TMEM177Q53S58 311 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 ZNF429Q86V71 674 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 OR8H3Q8N146 312 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 OR52E5Q8NH55 327 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 OR4A5Q8NH83 315 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 VSTM2AQ8TAG5 236 aa11.06□□□□□ -0.64
LDLR-213ENST00000560502 RCC1LQ96I51 464 aaKnown RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 CIB3Q96Q77 187 aaPredicted RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 LYRM2Q9NU23 88 aaPredicted RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 PAIP2BQ9ULR5 123 aaKnown RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 TSSC4Q9Y5U2 329 aaPredicted RBP11.06□□□□□ -0.64
LDLR-213ENST00000560502 TCRBV4S1A1TA0A5B7 111 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 LEUTXA8MZ59 168 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 TSC22D2O75157 780 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 PF4P02776 101 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 AMY1AP04745 511 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 POLR2GP62487 172 aaKnown RBP eCLIP11.05□□□□□ -0.64
LDLR-213ENST00000560502 TNFRSF9Q07011 255 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 CXorf66Q5JRM2 361 aaPredicted RBP11.05□□□□□ -0.64
LDLR-213ENST00000560502 CCDC144NLQ6NUI1 221 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 TEX261Q6UWH6 196 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 Q6ZRM9 215 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 OR2C3Q8N628 320 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 STOML3Q8TAV4 291 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 RPEQ96AT9 228 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 PHYHIPLQ96FC7 376 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 RHOVQ96L33 236 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 RNF5Q99942 180 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 ZC4H2Q9NQZ6 224 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 TMEM140Q9NV12 185 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 BET1LQ9NYM9 111 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 DPM3Q9P2X0 92 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 U3KQ87 197 aa11.05□□□□□ -0.64
LDLR-213ENST00000560502 LY6LH3BQJ8 138 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 SSSCA1O60232 199 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 LGALS7P47929 136 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 AP2S1P53680 142 aaPredicted RBP11.04□□□□□ -0.64
LDLR-213ENST00000560502 C10orf99Q6UWK7 81 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 CENPVQ7Z7K6 275 aaPredicted RBP11.04□□□□□ -0.64
LDLR-213ENST00000560502 LINC00482Q8N8I6 264 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 OR4A16Q8NH70 328 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 FLYWCH2Q96CP2 140 aaKnown RBP11.04□□□□□ -0.64
LDLR-213ENST00000560502 SMIM8Q96KF7 97 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 SLC25A33Q9BSK2 321 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 FKBP11Q9NYL4 201 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 PRNDQ9UKY0 176 aa11.04□□□□□ -0.64
LDLR-213ENST00000560502 FOXA2Q9Y261 457 aaPredicted RBP11.04□□□□□ -0.64
LDLR-213ENST00000560502 ZNF257Q9Y2Q1 563 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms