RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ZBTB34Q8NCN2 500 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 GLMPQ8WWB7 406 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 ZNF524Q96C55 264 aa11.48□□□□□ -0.57
SHMT2-226ENST00000556825 SRSF8Q9BRL6 282 aaKnown RBP11.48□□□□□ -0.57
SHMT2-226ENST00000556825 LSM7Q9UK45 103 aaKnown RBP11.48□□□□□ -0.57
SHMT2-226ENST00000556825 HRKO00198 91 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CT45A10P0DMU9 189 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 FOXI1Q12951 378 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 GUSBP1Q15486 140 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 IZUMO4Q1ZYL8 232 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 OR1L1Q8NH94 360 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 C18orf15Q96N68 181 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 DGAT2Q96PD7 388 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 MED29Q9NX70 200 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 POLDIP2Q9Y2S7 368 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 MYOFQ9NZM1 2061 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 LAMA2P24043 3122 aaKnown RBP11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CCDC179H3BU77 68 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 FOXH1O75593 365 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CT45A6P0DMU7 189 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CT45A5P0DMU8 189 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CT45A7P0DMV0 189 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 ARL4DP49703 201 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 TFF3Q07654 80 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 ZNF718Q3SXZ3 478 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 GAGE13Q4V321 117 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CT45A1Q5HYN5 189 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 LILRA6Q6PI73 481 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 CT45A3Q8NHU0 189 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 NT5CQ8TCD5 201 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 Q8TCH9 128 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 NRGNQ92686 78 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 C1QTNF5Q9BXJ0 243 aa11.47□□□□□ -0.57
SHMT2-226ENST00000556825 FREM3P0C091 2139 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 C3orf80F5H4A9 247 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 SMAD7O15105 426 aaKnown RBP11.46□□□□□ -0.57
SHMT2-226ENST00000556825 PGLYRP1O75594 196 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-226ENST00000556825 ZXDAP98168 799 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 FXYD3Q14802 87 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM211Q6ICI0 200 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 DGAT2L6Q6ZPD8 337 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 TMEM52Q8NDY8 209 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 ATP6V0E2Q8NHE4 81 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 MCRIP2Q9BUT9 160 aaKnown RBP11.46□□□□□ -0.57
SHMT2-226ENST00000556825 NXF5Q9H1B4 397 aaKnown RBP11.46□□□□□ -0.57
SHMT2-226ENST00000556825 RNASE7Q9H1E1 156 aaKnown RBP11.46□□□□□ -0.57
SHMT2-226ENST00000556825 PRO0461Q9UI25 63 aa11.46□□□□□ -0.57
SHMT2-226ENST00000556825 MKI67P46013 3256 aaKnown RBP11.46□□□□□ -0.57
SHMT2-226ENST00000556825 LAMA3Q16787 3333 aa11.46□□□□□ -0.58
SHMT2-226ENST00000556825 TDRD6O60522 2096 aaKnown RBP11.46□□□□□ -0.58
SHMT2-226ENST00000556825 C21orf140B9A014 251 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 KIR2DS3K7RE56 304 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 CLDN14O95500 239 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 CXorf1O96002 111 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 LINC00271P0C7V0 271 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 KIR2DS3Q14952 304 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 FNDC7Q5VTL7 733 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 TRAT1Q6PIZ9 186 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 NANOS1Q8WY41 292 aaKnown RBP11.45□□□□□ -0.58
SHMT2-226ENST00000556825 ADTRPQ96IZ2 230 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 VSTM2LQ96N03 204 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 NGBQ9NPG2 151 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 CCL28Q9NRJ3 127 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 IGKV1D-43A0A0B4J1Z2 117 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 CENPVL3A0A0U1RRI6 287 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 A0A1W2PRE2 83 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 PRSS29PA6NIE9 313 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 E9PLD3 99 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 APOMO95445 188 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 FASLGP48023 281 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 GDF5OSQ5U4N7 250 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 Q6ZPA2 131 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 BCORP1Q8N888 145 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 LYRM4Q9HD34 91 aa11.45□□□□□ -0.58
SHMT2-226ENST00000556825 YTHDF2Q9Y5A9 579 aaKnown RBP11.45□□□□□ -0.58
SHMT2-226ENST00000556825 A0A1W2PRU2 124 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 CELA2BP08218 269 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-226ENST00000556825 TAS2R45P59539 299 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 CARD17Q5XLA6 110 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 LINC00696Q6ZRV3 163 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 DAZAP1Q96EP5 407 aaKnown RBP11.44□□□□□ -0.58
SHMT2-226ENST00000556825 INSIG2Q9Y5U4 225 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 COL4A2P08572 1712 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 IGKV1D-13A0A0B4J2D9 117 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-226ENST00000556825 H3BMG7 143 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 CCL16O15467 120 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 IGKV1-13P0DP09 117 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 G6PCP35575 357 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 ZADH2Q8N4Q0 377 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 PHLDA1Q8WV24 401 aaPredicted RBP11.44□□□□□ -0.58
SHMT2-226ENST00000556825 WNT6Q9Y6F9 365 aa11.44□□□□□ -0.58
SHMT2-226ENST00000556825 MYO7AQ13402 2215 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 TGFAP01135 160 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 ARL14EPLP0DKL9 152 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 GABRG2P18507 467 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 CCL26Q9Y258 94 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 KIR2DS5A0A0G2JLQ3 304 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 A0A0G2JNG1 304 aa11.43□□□□□ -0.58
SHMT2-226ENST00000556825 SCGB2A1O75556 95 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms