RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PEAR1Q5VY43 1037 aaPredicted RBP12.36□□□□□ -0.43
CUX1-215ENST00000556210 NAT8BQ9UHF3 227 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 TMEM250H0YL14 139 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 SS18L1O75177 396 aaPredicted RBP12.36□□□□□ -0.43
CUX1-215ENST00000556210 RAB7AP51149 207 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 RHOBP62745 196 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 TNXAQ16473 311 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 ONECUT1Q9UBC0 465 aa12.36□□□□□ -0.43
CUX1-215ENST00000556210 SLC17A3O00476 420 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 ZNF146Q15072 292 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 TMEM183BQ1AE95 376 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 C1orf185Q5T7R7 199 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 HSPB9Q9BQS6 159 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 FAM87AP0C7U9 286 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 IER3P46695 156 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 BORCS7Q96B45 105 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 HES4Q9HCC6 221 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 NOTCH2Q04721 2471 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 SLC25A17O43808 307 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 CA2P00918 260 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 UBE2L3P68036 154 aaKnown RBP12.35□□□□□ -0.43
CUX1-215ENST00000556210 NPVFQ9HCQ7 196 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 GOLT1BQ9Y3E0 138 aa12.35□□□□□ -0.43
CUX1-215ENST00000556210 RPLP1P05386 114 aaKnown RBP12.34□□□□□ -0.43
CUX1-215ENST00000556210 AMTP48728 403 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 RANP62826 216 aaKnown RBP12.34□□□□□ -0.43
CUX1-215ENST00000556210 MLANAQ16655 118 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 SCRT1Q9BWW7 348 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 TMEM242Q9NWH2 141 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 TDGF1P13385 188 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 CEACAM1P13688 526 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 IGFBP2P18065 325 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 GNG4P50150 75 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 SSX7Q7RTT5 188 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 TGIF2LYQ8IUE0 185 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 GCSAMQ8N6F7 178 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 WDR31Q8NA23 367 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 OR1B1Q8NGR6 318 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 MBD3L1Q8WWY6 194 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 CLCF1Q9UBD9 225 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 RBP4P02753 201 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 C1QTNF9P0C862 333 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 SRP14P37108 136 aaKnown RBP12.34□□□□□ -0.43
CUX1-215ENST00000556210 MORN2Q502X0 79 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 SPRNQ5BIV9 151 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 LINC01560Q8TB33 94 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 DAZAP1Q96EP5 407 aaKnown RBP12.34□□□□□ -0.43
CUX1-215ENST00000556210 IMMP2LQ96T52 175 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 TRAV1-1A0A0B4J248 108 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 CBY3A6NI87 242 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 CD33P20138 364 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 UBE2G1P62253 170 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 OR5AU1Q8NGC0 362 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 FLYWCH2Q96CP2 140 aaKnown RBP12.34□□□□□ -0.43
CUX1-215ENST00000556210 RNF115Q9Y4L5 304 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 S4R3C0 116 aa12.34□□□□□ -0.43
CUX1-215ENST00000556210 CRYBB3P26998 211 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 K7EM74 188 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 C10orf55Q5SWW7 151 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 OR4A47Q6IF82 309 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 DMRTC2Q8IXT2 367 aaPredicted RBP12.33□□□□□ -0.44
CUX1-215ENST00000556210 OR10W1Q8NGF6 305 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 TMEM170AQ8WVE7 144 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 SAA2-SAA4A0A096LPE2 208 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 SCO2A0A1W2PP80 73 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 CGAP01215 116 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 IGKV1D-33P01593 117 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 IGKV1-33P01594 117 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 SAA2P0DJI9 122 aaPredicted RBP12.33□□□□□ -0.44
CUX1-215ENST00000556210 DUTP33316 252 aaKnown RBP12.33□□□□□ -0.44
CUX1-215ENST00000556210 GLRXP35754 106 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 TCF23Q7RTU1 214 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 DOLPP1Q86YN1 238 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 KCNIP2Q9NS61 270 aa12.33□□□□□ -0.44
CUX1-215ENST00000556210 IGKV1D-17A0A075B6S4 117 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 PPIAL4EA0A075B759 164 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 SNURFLB1AK76 121 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 PPIAL4DF5H284 164 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 EREGO14944 169 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 PPIAL4FP0DN26 164 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 RND2P52198 227 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 TRAT1Q6PIZ9 186 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 PPIAL4AQ9Y536 164 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 PDE6DO43924 150 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 CBLN1P23435 193 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 ZNF474Q6S9Z5 364 aaPredicted RBP12.32□□□□□ -0.44
CUX1-215ENST00000556210 HAPLN4Q86UW8 402 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 FAM90A1Q86YD7 464 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 STPG3Q8N7X2 389 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 ZNF439Q8NDP4 499 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 A8MWP6 167 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 CD24P25063 80 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 CD40P25942 277 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 GAL3ST2Q9H3Q3 398 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 HILPDAQ9Y5L2 63 aa12.32□□□□□ -0.44
CUX1-215ENST00000556210 NCBP2LA6PVI3 153 aaKnown RBP12.31□□□□□ -0.44
CUX1-215ENST00000556210 TAS2R45P59539 299 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 HSPE1P61604 102 aaKnown RBP12.31□□□□□ -0.44
CUX1-215ENST00000556210 BSPH1Q075Z2 132 aa12.31□□□□□ -0.44
CUX1-215ENST00000556210 SPATA31B1PQ5VZV4 182 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms