RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 MAP1LC3B2A6NCE7 125 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 C17orf98A8MV24 154 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 C1orf196B1AJZ1 125 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 M0R1X1 148 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 ST8SIA5O15466 376 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 IFNA4P05014 189 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 FHITP49789 147 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 OR2B8PP59922 312 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 SPCS3P61009 180 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 RPL30P62888 115 aaKnown RBP9.03□□□□□ -0.96
SHMT2-216ENST00000554975 VWC2Q2TAL6 325 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 TEX36Q5VZQ5 186 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 RBMS3Q6XE24 437 aaKnown RBP9.03□□□□□ -0.96
SHMT2-216ENST00000554975 C5orf30Q96GV9 206 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 MAP1LC3BQ9GZQ8 125 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 GAL3ST2Q9H3Q3 398 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 MANBALQ9NQG1 85 aa9.03□□□□□ -0.96
SHMT2-216ENST00000554975 TRAV38-1A0A0B4J264 116 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 KBTBD11-OT1A0A1B0GTJ5 212 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 hADV38S2A0JD32 116 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 GPR37O15354 613 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 TGOLN2O43493 480 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 RAMP3O60896 148 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 SNRNP70P08621 437 aaKnown RBP9.02□□□□□ -0.97
SHMT2-216ENST00000554975 SRP19P09132 144 aaKnown RBP9.02□□□□□ -0.97
SHMT2-216ENST00000554975 RAB13P51153 203 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 ATP5IP56385 69 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-216ENST00000554975 RAB11AP62491 216 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 GNB2P62879 340 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 LCN2P80188 198 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 MEF2CQ06413 473 aaPredicted RBP9.02□□□□□ -0.97
SHMT2-216ENST00000554975 OR2B11Q5JQS5 317 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 ZNF429Q86V71 674 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 KIR3DL3Q8N743 410 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 OR4A16Q8NH70 328 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 CORO2AQ92828 525 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 TVP23CQ96ET8 276 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 RCC1LQ96I51 464 aaKnown RBP9.02□□□□□ -0.97
SHMT2-216ENST00000554975 AGMATQ9BSE5 352 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 RSG1Q9BU20 258 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 IFI27L2Q9H2X8 130 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 LINC00574Q9H8X3 128 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 TMEM106BQ9NUM4 274 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 DCAF16Q9NXF7 216 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 CLN8Q9UBY8 286 aa9.02□□□□□ -0.97
SHMT2-216ENST00000554975 IGHV3-43A0A0B4J1X8 118 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 CXorf65A6NEN9 183 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 C9JQL5 133 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 FCGR3BO75015 233 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 HRASP01112 189 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 ARG1P05089 322 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 IGHV3-43DP0DP04 118 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 FGF7P21781 194 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 DLK1P80370 383 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 ICAM4Q14773 271 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 POU2AF1Q16633 256 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 RTL8BQ17RB0 113 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 IZUMO4Q1ZYL8 232 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 ACOT6Q3I5F7 207 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-216ENST00000554975 OR8G2PQ6IF36 304 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 FAM71F2Q6NXP2 309 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 BTNL3Q6UXE8 466 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 ZNF788Q6ZQV5 615 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 HAPLN4Q86UW8 402 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 DEFB108BQ8NET1 73 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 MALSU1Q96EH3 234 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 OR4C12Q96R67 309 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 CITED1Q99966 193 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 ACTR3CQ9C0K3 210 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-216ENST00000554975 ENY2Q9NPA8 101 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 RPRMQ9NS64 109 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 IDI2-AS1Q9NZ38 188 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 VAX2Q9UIW0 290 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 LINC00312Q9Y6C7 94 aa9.01□□□□□ -0.97
SHMT2-216ENST00000554975 IGHV3OR15-7A0A075B7D8 119 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 LINC00473A8K010 186 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 FNDC10F2Z333 226 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 TMEM250H0YL14 139 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 IFNA17P01571 189 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 PRB2P02812 416 aaPredicted RBP9□□□□□ -0.97
SHMT2-216ENST00000554975 OR13C7P0DN81 318 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 LOXL3P58215 753 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 HAGHQ16775 308 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 TPRX1Q8N7U7 411 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 RFESDQ8TAC1 157 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 RXFP4Q8TDU9 374 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 GAFA1Q96PS6 74 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 TXNDC17Q9BRA2 123 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 GCM1Q9NP62 436 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 SLC39A9Q9NUM3 307 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 GNG13Q9P2W3 67 aa9□□□□□ -0.97
SHMT2-216ENST00000554975 NOTCH3Q9UM47 2321 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 A0A1B0GV50 99 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 MDFIC2A0A1B0GVS7 189 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 C15orf61A6NNL5 157 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 C3orf80F5H4A9 247 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 H3BQ15 152 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 CLDN34H7C241 214 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 CYB5BO43169 146 aa8.99□□□□□ -0.97
SHMT2-216ENST00000554975 CYB5R3P00387 301 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms