RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 CASTOR1Q8WTX7 329 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 MRGPRFQ96AM1 343 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 SEC22AQ96IW7 307 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 NAA60Q9H7X0 242 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 TMEM14BQ9NUH8 114 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 KLK9Q9UKQ9 250 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 OR51B2Q9Y5P1 312 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 PKD1L1Q8TDX9 2849 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 IGLC7A0M8Q6 106 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 HMX3A6NHT5 357 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 OVOL1O14753 267 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 APELAP0DMC3 54 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 ANXA3P12429 323 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 SRPXP78539 464 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 ZNF45Q02386 682 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 EGFEM1PQ0D2K5 195 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 EXOSC2Q13868 293 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 ZNF429Q86V71 674 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 SGPP2Q8IWX5 399 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 RNASE11Q8TAA1 199 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 RRNAD1Q96FB5 475 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 CXorf58Q96LI9 332 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 TP53RKQ96S44 253 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 SLC25A21Q9BQT8 299 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 PDCD10Q9BUL8 212 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 SRRQ9GZT4 340 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 TMEM222Q9H0R3 208 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 AKIP1Q9NQ31 210 aa11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 PEF1Q9UBV8 284 aaKnown RBP11.11□□□□□ -0.63
CCDC88C-207ENST00000554051 VWFP04275 2813 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 IGHV4OR15-8A0A075B7B6 117 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 A0A087WW49 117 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 NAP1L6A6NFF2 107 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 CRYM-AS1A6NIL9 109 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 SEC14L6B5MCN3 397 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 RBMXL2O75526 392 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 AREGP15514 252 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 HOXD3P31249 432 aaPredicted RBP11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 TATDN3Q17R31 274 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 C15orf32Q32M92 178 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 FOXB2Q5VYV0 432 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 IL22RA2Q969J5 263 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 EEF1AKMT3Q96AZ1 226 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 GALNT14Q96FL9 552 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 ELOVL1Q9BW60 279 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 C5orf66Q9H5L9 145 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 NDUFA4L2Q9NRX3 87 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 GPR132Q9UNW8 380 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 KCNIP3Q9Y2W7 256 aa11.1□□□□□ -0.63
CCDC88C-207ENST00000554051 MECP2P51608 486 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 PRCDQ00LT1 54 aa11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 RPEL1Q2QD12 228 aa11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 PDLIM3Q53GG5 364 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 RBPMSQ93062 196 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 ATP6V0BQ99437 205 aa11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 C7orf50Q9BRJ6 194 aaKnown RBP11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 ALX4Q9H161 411 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 PLEKHA3Q9HB20 300 aa11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 FBXL7Q9UJT9 491 aa11.09□□□□□ -0.63
CCDC88C-207ENST00000554051 IGLV11-55A0A075B6I3 123 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 TRBV7-1A0A0A6YYK4 115 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 TRAV3A0A0B4J244 114 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 TEX50A0A1B0GTY4 177 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 A0A1B0GW64 132 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 CGB1A6NKQ9 187 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 CENPXA8MT69 81 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 E7EUB6 86 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 OR2J3O76001 311 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 CDS2O95674 445 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 IGKV1-39P01597 117 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 IGKV1D-39P04432 117 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 OR5AC1P0C628 307 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 OR13C7P0DN81 318 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 ZNF57Q68EA5 555 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 DCUN1D4Q92564 292 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 RTBDNQ9BSG5 229 aaPredicted RBP11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 PEMTQ9UBM1 199 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 NOTCH1P46531 2555 aa11.08□□□□□ -0.64
CCDC88C-207ENST00000554051 NOTCH3Q9UM47 2321 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 INS-IGF2F8WCM5 200 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 P0C879 139 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 SLURP1P55000 103 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 RBMS2Q15434 407 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 SLC35G3Q8N808 338 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 ZNF114Q8NC26 417 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 VN1R17PQ8TDU5 208 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 FANCD2OSQ96PS1 177 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 HINT2Q9BX68 163 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 NSG2Q9Y328 171 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 F11RQ9Y624 299 aaKnown RBP11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 TMEM56-RWDD3S4R434 201 aa11.07□□□□□ -0.64
CCDC88C-207ENST00000554051 DUXBA0A1W2PPF3 345 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 ANKRD34BA5PLL1 514 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 SAP30O75446 220 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 IGKV1-5P01602 117 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 PRH1P02810 166 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 MYOD1P15172 320 aa11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 UBE2MP61081 183 aaKnown RBP11.06□□□□□ -0.64
CCDC88C-207ENST00000554051 HSPE1P61604 102 aaKnown RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms