RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CRIM1Q9NZV1 1036 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 CLDN16Q9Y5I7 305 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 OOSP1A8MZH6 123 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF818PQ6ZRF7 136 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 DTX2Q86UW9 622 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 SLC22A18ASQ8N1D0 253 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 TEX45Q8NA69 505 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 ASCL2Q99929 193 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 PARLQ9H300 379 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 FZR1Q9UM11 496 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 A0A0G2JK05 382 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 A0A1W2PRX2 142 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 LINC00587B1AMM8 73 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 DLX6P56179 175 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 ARF6P62330 175 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 IFITM3Q01628 133 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 PRELID3AQ96N28 172 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 IGLV3-12A0A075B6K2 115 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 SPINT1O43278 529 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF708P17019 499 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 ECSCRQ19T08 205 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 LAMTOR2Q9Y2Q5 125 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 SCN9AQ15858 1988 aa6.61□□□□□ -1.35
VPS13D-211ENST00000543710 PPIAL4CA0A0B4J2A2 164 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 LOC105371267A0A1B0GV96 52 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 C9JCJ5 164 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF205O95201 554 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 PPIAL4GP0DN37 164 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 ERVK11-1P61568 191 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 MMDQ15546 238 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 CT83Q5H943 113 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 DMRTA1Q5VZB9 504 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 MBNL2Q5VZF2 373 aaKnown RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 PIP4P1Q86T03 277 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 FAM89BQ8N5H3 189 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 APCDD1LQ8NCL9 501 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 FAM110DQ8TAY7 271 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 HIST1H4GQ99525 98 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TCF19Q9Y242 345 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 IGFBP6P24592 240 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 PRSS12P56730 875 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 FAM169BQ8N8A8 192 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 NABP2Q9BQ15 211 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TBL2Q9Y4P3 447 aaKnown RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 OR4C46A6NHA9 309 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 F2Z2F3 143 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 PEX7O00628 323 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 DUSP14O95147 198 aaKnown RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TIMP3P35625 211 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 MFAP2P55001 183 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TMEM52Q8NDY8 209 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 RTBDNQ9BSG5 229 aaPredicted RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 GFRA4Q9GZZ7 299 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 FRMPD3Q5JV73 1810 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 PIN1P1O15428 100 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF250P15622 560 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TUSC1Q2TAM9 212 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TTC32Q5I0X7 151 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TSPO2Q5TGU0 170 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 Q6ZS92 163 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 ZAR1Q86SH2 424 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF385AQ96PM9 386 aaKnown RBP6.6□□□□□ -1.35
VPS13D-211ENST00000543710 NCOR1P1Q9H4R4 102 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 ZNF257Q9Y2Q1 563 aa6.6□□□□□ -1.35
VPS13D-211ENST00000543710 TRBV6-7A0A0A0MS04 114 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 ITGB1BP1O14713 200 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 CCL8P80075 99 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 ZFP36L1Q07352 338 aaKnown RBP6.59□□□□□ -1.35
VPS13D-211ENST00000543710 TM4SF20Q53R12 229 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 SPINK9Q5DT21 86 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 DTX4Q9Y2E6 619 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 CEP290O15078 2479 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 A0A1W2PRE2 83 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 PSCAO43653 123 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 SEC11AP67812 179 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 Q0VFX4 171 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 RGP1Q92546 391 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-211ENST00000543710 SCTP09683 121 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 DMRTC1Q5HYR2 192 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 PGPA6NDG6 321 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 NTN3O00634 580 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-211ENST00000543710 GLRXP35754 106 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 NMUP48645 174 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 SPATA31B1PQ5VZV4 182 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 SDHCQ99643 169 aaPredicted RBP6.59□□□□□ -1.35
VPS13D-211ENST00000543710 SRXN1Q9BYN0 137 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 PHLDA3Q9Y5J5 127 aa6.59□□□□□ -1.35
VPS13D-211ENST00000543710 TRIP11Q15643 1979 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 TRGV11A0A075B6L2 103 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 NPPCP23582 126 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 H2BFSP57053 126 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 ZP1P60852 638 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 CCL20P78556 96 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 ORMDL2Q53FV1 153 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 CDCP2Q5VXM1 449 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF497Q6ZNH5 498 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 PNKDQ8N490 385 aa6.59□□□□□ -1.36
VPS13D-211ENST00000543710 SSBP4Q9BWG4 385 aaPredicted RBP6.59□□□□□ -1.36
VPS13D-211ENST00000543710 NXT2Q9NPJ8 142 aaKnown RBP6.59□□□□□ -1.36
VPS13D-211ENST00000543710 FOXA2Q9Y261 457 aaPredicted RBP6.59□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms