RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 C2orf83Q53S99 150 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 TREML4Q6UXN2 200 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 PDPNQ86YL7 162 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 FAM216BQ8N7L0 139 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 OR5AN1Q8NGI8 311 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 OR1L8Q8NGR8 309 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 VSTM2AQ8TAG5 236 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 ZCCHC14Q8WYQ9 949 aaKnown RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 MUC3AQ02505 3323 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 ZNF727A8MUV8 499 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 SHISA9B4DS77 424 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 RBP4P02753 201 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 LINC00614P0C842 121 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 CT45A6P0DMU7 189 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 CT45A5P0DMU8 189 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 CT45A7P0DMV0 189 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 CD99P14209 185 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 ZNF25P17030 456 aaPredicted RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 RPS10P46783 165 aaKnown RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 RPL31P62899 125 aaKnown RBP8.08□□□□□ -1.12
SS18-205ENST00000542420 FOXC1Q12948 553 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 TMEM241Q24JQ0 296 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 NEUROG1Q92886 237 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 ANAPC16Q96DE5 110 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 GOLT1BQ9Y3E0 138 aa8.08□□□□□ -1.12
SS18-205ENST00000542420 PLCE1Q9P212 2302 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 CFAP54Q96N23 3096 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 TMPRSS2O15393 492 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 GZMBP10144 247 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 IL3RAP26951 378 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 COTL1Q14019 142 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 HNF4GQ14541 408 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 JOSD1Q15040 202 aaPredicted RBP8.07□□□□□ -1.12
SS18-205ENST00000542420 FAM201AQ5SY85 155 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 TEPPQ6URK8 271 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 SLC35E1Q96K37 410 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 SCNM1Q9BWG6 230 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 GGTLC1Q9BX51 225 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 PLEKHA3Q9HB20 300 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 OR51B2Q9Y5P1 312 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 A0A1W2PN81 502 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 A0A1W2PPV4 95 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 PPP1R2P9O14990 202 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 CXorf1O96002 111 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 MT-CO2P00403 227 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 CXCL1P09341 107 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 STAG3L2P0CL84 134 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 STAG3L3P0CL85 134 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 USF1P22415 310 aaPredicted RBP8.07□□□□□ -1.12
SS18-205ENST00000542420 CHRNA7P36544 502 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 CA7P43166 264 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 FGF8P55075 233 aaPredicted RBP8.07□□□□□ -1.12
SS18-205ENST00000542420 PDZD11Q5EBL8 140 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 C1orf229Q6ZS94 237 aaPredicted RBP8.07□□□□□ -1.12
SS18-205ENST00000542420 CACNG8Q8WXS5 425 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 HIST1H2BLQ99880 126 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 SLC25A22Q9H936 323 aa8.07□□□□□ -1.12
SS18-205ENST00000542420 ZNF292O60281 2723 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 PHOX2AO14813 284 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 CD3EP07766 207 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 FABP4P15090 132 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 MC5RP33032 325 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 DLX6P56179 175 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 LINC00205P59089 165 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 CCL8P80075 99 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 TGIF2LYQ8IUE0 185 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 MRPL41Q8IXM3 137 aaKnown RBP8.06□□□□□ -1.12
SS18-205ENST00000542420 ST6GALNAC3Q8NDV1 305 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 DEFB108BQ8NET1 73 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 TMEM167AQ8TBQ9 72 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 TMEM170AQ8WVE7 144 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 WFIKKN1Q96NZ8 548 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 MGST2Q99735 147 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 SMIM7Q9BQ49 75 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 PYGO2Q9BRQ0 406 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 DYNLRB1Q9NP97 96 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 PXMP4Q9Y6I8 212 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 H0YJW9 148 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 J3QR06 171 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 RRHO14718 337 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 RHOBP62745 196 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 TMEM155Q4W5P6 130 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 TMEM200BQ69YZ2 307 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 DUX4L9Q6RFH8 374 aaPredicted RBP8.06□□□□□ -1.12
SS18-205ENST00000542420 TMEM144Q7Z5S9 345 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 RNASEH2CQ8TDP1 164 aaKnown RBP8.06□□□□□ -1.12
SS18-205ENST00000542420 Q8WTZ3 238 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 PACRGQ96M98 296 aaPredicted RBP8.06□□□□□ -1.12
SS18-205ENST00000542420 IMMP2LQ96T52 175 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 RNF2Q99496 336 aa8.06□□□□□ -1.12
SS18-205ENST00000542420 YLPM1P49750 1951 aaKnown RBP8.05□□□□□ -1.12
SS18-205ENST00000542420 TRAV3A0A0B4J244 114 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 E7EQL1 145 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 PPOXP50336 477 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 PRR20EP86478 221 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 PRR20CP86479 221 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 PRR20DP86480 221 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 PRR20BP86481 221 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 PRR20AP86496 221 aa8.05□□□□□ -1.12
SS18-205ENST00000542420 SAPCD1Q5SSQ6 148 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms