RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 HABP2Q14520 560 aaPredicted RBP8.86□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF257Q9Y2Q1 563 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 TNRC6AQ8NDV7 1962 aaKnown RBP8.86□□□□□ -0.99
CLIP1-213ENST00000540338 SFTPCP11686 197 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 GCHFRP30047 84 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 CNN1P51911 297 aaKnown RBP8.86□□□□□ -0.99
CLIP1-213ENST00000540338 UBE2G1P62253 170 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 GCSAMLQ5JQS6 135 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 TEX36Q5VZQ5 186 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 PQLC2Q6ZP29 291 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 OR4X1Q8NH49 305 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 FAM222BQ8WU58 562 aa8.86□□□□□ -0.99
CLIP1-213ENST00000540338 VENTXO95231 258 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 SMIM6P0DI80 62 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 ORM2P19652 201 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 SLC16A13Q7RTY0 426 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 Q8WTZ3 238 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 CLEC7AQ9BXN2 247 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 BET1LQ9NYM9 111 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 MIOXQ9UGB7 285 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 PCSK5Q92824 1860 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 HLA-DRB5Q30154 266 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 TMEM144Q7Z5S9 345 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 C19orf24Q9BVV8 132 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 HELTA6NFD8 242 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 E7EQL1 145 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 SELENOTP62341 195 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF726P1Q15940 193 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 C10orf113Q5VZT2 155 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 DAZAP1Q96EP5 407 aaKnown RBP8.85□□□□□ -0.99
CLIP1-213ENST00000540338 C5orf30Q96GV9 206 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 GGTLC1Q9BX51 225 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 ELOA3CA0A087WX78 387 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-213ENST00000540338 LINC00869P0C866 280 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 OR10D4PQ8NGN7 298 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 GATAD1Q8WUU5 269 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 TRAPPC1Q9Y5R8 145 aa8.85□□□□□ -0.99
CLIP1-213ENST00000540338 TEX50A0A1B0GTY4 177 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 APELAP0DMC3 54 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 RPL29P47914 159 aaKnown RBP8.84□□□□□ -0.99
CLIP1-213ENST00000540338 OR4A5Q8NH83 315 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 CMTM2Q8TAZ6 248 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 METTL1Q9UBP6 276 aaKnown RBP8.84□□□□□ -0.99
CLIP1-213ENST00000540338 A0A1W2PRD5 423 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 A0A1W2PRF3 423 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 A0A1W2PRM7 423 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 YIF1AO95070 293 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 MDKP21741 143 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-213ENST00000540338 ATP5G3P48201 142 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 RPL23P62829 140 aaKnown RBP8.84□□□□□ -0.99
CLIP1-213ENST00000540338 SUMO1P63165 101 aaKnown RBP8.84□□□□□ -0.99
CLIP1-213ENST00000540338 ELOBQ15370 118 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 FAM90A2PQ658T7 463 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 HCP5Q6MZN7 132 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 CACNG8Q8WXS5 425 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 NEUROG1Q92886 237 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 ZNF430Q9H8G1 570 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-213ENST00000540338 LYNX1G3V0Z9 82 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 LYNX1P0DP58 116 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 PPOXP50336 477 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 LYPD2Q6UXB3 125 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 ODF3L1Q8IXM7 274 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 TMEM133Q9H2Q1 129 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 DNAJC4Q9NNZ3 241 aa8.84□□□□□ -0.99
CLIP1-213ENST00000540338 LIPFP07098 398 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 C8orf88P0DMB2 117 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 FABP4P15090 132 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 SRP14P37108 136 aaKnown RBP8.83□□□□□ -1
CLIP1-213ENST00000540338 VDAC2P45880 294 aaPredicted RBP8.83□□□□□ -1
CLIP1-213ENST00000540338 OR1B1Q8NGR6 318 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 FUT9Q9Y231 359 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 COL6A6A6NMZ7 2263 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 ZNF705GA8MUZ8 300 aaPredicted RBP8.83□□□□□ -1
CLIP1-213ENST00000540338 MMP23AO75900 390 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 RBP4P02753 201 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 IGKV1-16P04430 117 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 OR10J4P0C629 311 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 MMDQ15546 238 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 WDR25Q64LD2 544 aaPredicted RBP8.83□□□□□ -1
CLIP1-213ENST00000540338 NPIPB3Q92617 1050 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 MGST2Q99735 147 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 ARHGAP21Q5T5U3 1957 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 XKRY2A2RUG3 117 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 FAM157AC9JC47 383 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 IGKV1D-33P01593 117 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 IGKV1-33P01594 117 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 MYOD1P15172 320 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 AGAP20933 346 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 RND2P52198 227 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 FAM3BP58499 235 aaPredicted RBP8.83□□□□□ -1
CLIP1-213ENST00000540338 CR1LQ2VPA4 569 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 SGMS2Q8NHU3 365 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 PCGF1Q9BSM1 259 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 TMEM242Q9NWH2 141 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 ABCA4P78363 2273 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 NCBP2LA6PVI3 153 aaKnown RBP8.83□□□□□ -1
CLIP1-213ENST00000540338 CCKARP32238 428 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 CD81P60033 236 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 ARF6P62330 175 aa8.83□□□□□ -1
CLIP1-213ENST00000540338 STXBP6Q8NFX7 210 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms