RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 CCL2P13500 99 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 HMGA1P17096 107 aaKnown RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 HOXB4P17483 251 aaPredicted RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 EDDM3BP56851 147 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 RBM11P57052 281 aaKnown RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 ID3Q02535 119 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 PRDX1Q06830 199 aaKnown RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 CATR1Q13166 79 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ZIC1Q15915 447 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 GAB4Q2WGN9 574 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 DHRS13Q6UX07 377 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 C12orf54Q6X4T0 127 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ASCL4Q6XD76 172 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 SHISA6Q6ZSJ9 500 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 DOK3Q7L591 496 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 VN1R4Q7Z5H5 301 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TMEM25Q86YD3 366 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TAF15Q92804 592 aaKnown RBP eCLIP3.1□□□□□ -1.91
MCF2-210ENST00000536274 URB1-AS1Q96HZ7 61 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 OR2A5Q96R48 311 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 RAB40CQ96S21 281 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 C1QTNF5Q9BXJ0 243 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TMEM222Q9H0R3 208 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 SCRT2Q9NQ03 307 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 IL36BQ9NZH7 164 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 RABAC1Q9UI14 185 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 BOKQ9UMX3 212 aaPredicted RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 THADAQ6YHU6 1953 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 A0A1W2PPM0 123 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ANKRD30BLA7E2S9 258 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TMEM250H0YL14 139 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TNFRSF13BO14836 293 aaPredicted RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 ZIC3O60481 467 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TNFP01375 233 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 CSN3P07498 182 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 PSG2P11465 335 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 CD59P13987 128 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 XGP55808 180 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ZNF121P58317 390 aaPredicted RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 ROM1Q03395 351 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 PRICKLE4Q2TBC4 344 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 LRRC75BQ2VPJ9 315 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 Q6ZR03 302 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 CDRT4Q8N9R6 151 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 RDH5Q92781 318 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 FER1L6-AS2Q96M78 137 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ZFYVE21Q9BQ24 234 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 FAM110AQ9BQ89 295 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 C1QTNF4Q9BXJ3 329 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ULBP2Q9BZM5 246 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 YAE1D1Q9NRH1 226 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 TNFRSF19Q9NS68 423 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 C1RLQ9NZP8 487 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 CACNG5Q9UF02 275 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 C19orf25Q9UFG5 118 aaPredicted RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 KCNS2Q9ULS6 477 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 FZR1Q9UM11 496 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.1□□□□□ -1.91
MCF2-210ENST00000536274 TNFRSF18Q9Y5U5 241 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 MPC1Q9Y5U8 109 aa3.1□□□□□ -1.91
MCF2-210ENST00000536274 ASPMQ8IZT6 3477 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 MYO7AQ13402 2215 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 hCG_38984A0A1B0GV85 526 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 PSMB11A5LHX3 300 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 FOXI3A8MTJ6 420 aaPredicted RBP3.09□□□□□ -1.91
MCF2-210ENST00000536274 FOXH1O75593 365 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 PPYP01298 95 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 IGHG1P01857 330 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SCTP09683 121 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 FTH1P19P0C7X4 201 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 LINC00869P0C866 280 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SCGB1A1P11684 91 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 MYF5P13349 255 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 NPBWR2P48146 333 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 TBR1Q16650 682 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 RPEL1Q2QD12 228 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 CEACAM16Q2WEN9 425 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 DEFB110Q30KQ9 67 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 TIMM23BQ5SRD1 257 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SFTPA1Q8IWL2 248 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SYT8Q8NBV8 401 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 OR1L3Q8NH93 324 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 VSTM2AQ8TAG5 236 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 C8orf46Q8TAG6 207 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SGK494Q96LW2 274 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 ANAPC13Q9BS18 74 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SPANXB1Q9NS25 103 aaPredicted RBP3.09□□□□□ -1.91
MCF2-210ENST00000536274 DECR2Q9NUI1 292 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 CCL26Q9Y258 94 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 YTHDF2Q9Y5A9 579 aaKnown RBP3.09□□□□□ -1.91
MCF2-210ENST00000536274 TNFSF14O43557 240 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 FOXS1O43638 330 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 APCSP02743 223 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 SLC35E2P0CK97 266 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 BCL3P20749 454 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 NTF4P34130 210 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 KIR2DL1P43626 348 aaPredicted RBP3.09□□□□□ -1.91
MCF2-210ENST00000536274 SLC38A11Q08AI6 406 aa3.09□□□□□ -1.91
MCF2-210ENST00000536274 MRPL23Q16540 153 aaKnown RBP3.09□□□□□ -1.91
MCF2-210ENST00000536274 NMSQ5H8A3 153 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms