RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 GNB1LQ9BYB4 327 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 OPN3Q9H1Y3 402 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-233ENST00000535896 PRO1933Q9H354 126 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM167BQ9NRX6 74 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 NAGKQ9UJ70 344 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 FOXA2Q9Y261 457 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF257Q9Y2Q1 563 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 SMG1Q96Q15 3661 aaKnown RBP5.24□□□□□ -1.57
SYNE1-233ENST00000535896 DOCK11Q5JSL3 2073 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 SAA2-SAA4A0A096LPE2 208 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 A0A0U1RQK1 487 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF320A2RRD8 509 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 LINC00473A8K010 186 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF705GA8MUZ8 300 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-233ENST00000535896 SRRM5B3KS81 715 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 NDUFB4O95168 129 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 IGLV1-44P01699 117 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 PF4P02776 101 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 REG1AP05451 166 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 FAM87AP0C7U9 286 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ARL14EPLP0DKL9 152 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 IGHV1-2P23083 117 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 GCH1P30793 250 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ATP5G3P48201 142 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 THBS3P49746 956 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ARG2P78540 354 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 PMP22Q01453 160 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 AESQ08117 197 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 FOXF2Q12947 444 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 GAGE1Q13065 139 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 OR10J3Q5JRS4 329 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 SPATA46Q5T0L3 261 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 CST9LP1Q5W188 147 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TEPPQ6URK8 271 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 FAM180AQ6UWF9 173 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TEX43Q6ZNM6 134 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 PQLC2Q6ZP29 291 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 FAM214BQ7L5A3 538 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 GCNT2Q8N0V5 402 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ZADH2Q8N4Q0 377 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF808Q8N4W9 903 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-233ENST00000535896 OR4B1Q8NGF8 309 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 OR52L2PQ8NGH6 319 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 MRGPRDQ8TDS7 321 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM37Q8WXS4 190 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 DDB2Q92466 427 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 MISP3Q96FF7 219 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 SDSLQ96GA7 329 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 MS4A10Q96PG2 267 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 RNF2Q99496 336 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 MGST2Q99735 147 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 HEYLQ9NQ87 328 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM14BQ9NUH8 114 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM106BQ9NUM4 274 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 SLC45A2Q9UMX9 530 aa5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TET2Q6N021 2002 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-233ENST00000535896 TRBV20OR9-2A0A075B6H5 130 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TRAV17A0A0B4J275 112 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 INS-IGF2F8WCM5 200 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TIMM8AO60220 97 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TNFSF13O75888 250 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 GRPP07492 148 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 OR9G9P0C7N8 305 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 NPY1RP25929 384 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 GCHFRP30047 84 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 CHRNA7P36544 502 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 LGALS4P56470 323 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TAS2R45P59539 299 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TLE1Q04724 770 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 USF2Q15853 346 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF124Q15973 351 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 RPEL1Q2QD12 228 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 MORN2Q502X0 79 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 ANKRD39Q53RE8 183 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 CYB5R2Q6BCY4 276 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 LINC00696Q6ZRV3 163 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 Q6ZS46 218 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 SLC24A4Q8NFF2 622 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 OR13A1Q8NGR1 328 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 GATAD1Q8WUU5 269 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 NEUROG1Q92886 237 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 S1PR3Q99500 378 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 MRPL32Q9BYC8 188 aaKnown RBP5.22□□□□□ -1.57
SYNE1-233ENST00000535896 HES7Q9BYE0 225 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 LINC00574Q9H8X3 128 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 OSTCQ9NRP0 149 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM140Q9NV12 185 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 SPRR3Q9UBC9 169 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 PRNDQ9UKY0 176 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 PSG11Q9UQ72 335 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 TCF19Q9Y242 345 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 DOCK7Q96N67 2140 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 NBASA2RRP1 2371 aa5.22□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF462Q96JM2 2506 aa5.21□□□□□ -1.58
SYNE1-233ENST00000535896 TRAV39A0A0B4J263 110 aa5.21□□□□□ -1.58
SYNE1-233ENST00000535896 TRAV38-1A0A0B4J264 116 aa5.21□□□□□ -1.58
SYNE1-233ENST00000535896 A0A1W2PRE2 83 aa5.21□□□□□ -1.58
SYNE1-233ENST00000535896 ISLRO14498 428 aa5.21□□□□□ -1.58
SYNE1-233ENST00000535896 AQP7O14520 342 aa5.21□□□□□ -1.58
SYNE1-233ENST00000535896 TCAPO15273 167 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms