RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IGLV4-69A0A075B6H9 119 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 GNG14A0A1W2PPG7 69 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 HMGN2P05204 90 aaKnown RBP2.25□□□□□ -2.05
CD44-235ENST00000532339 GLAP06280 429 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 S100A9P06702 114 aaKnown RBP2.25□□□□□ -2.05
CD44-235ENST00000532339 LGALS1P09382 135 aaKnown RBP2.25□□□□□ -2.05
CD44-235ENST00000532339 CD34P28906 385 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 NUP62P37198 522 aaPredicted RBP2.25□□□□□ -2.05
CD44-235ENST00000532339 MARCKSL1P49006 195 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ETV1P50549 477 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 OR2B8PP59922 312 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 SYCNQ0VAF6 134 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 NAB1Q13506 487 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 APOFQ13790 326 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ZNF829Q3KNS6 432 aaPredicted RBP2.25□□□□□ -2.05
CD44-235ENST00000532339 KRTAP20-1Q3LI63 56 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 AADACL4Q5VUY2 407 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 NANOGP8Q6NSW7 305 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 NTM-AS1Q6ZSK4 140 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ZNF826PQ6ZT77 177 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 CALHM1Q8IU99 346 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 CYB561D1Q8N8Q1 229 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 NECAP1Q8NC96 275 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 OR13C9Q8NGT0 318 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 C16orf78Q8WTQ4 265 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 CACNG8Q8WXS5 425 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ITFG2Q969R8 447 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 KCTD7Q96MP8 289 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 OR2H1Q9GZK4 316 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 DERL2Q9GZP9 239 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 SLC22A4Q9H015 551 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 TMEM27Q9HBJ8 222 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 LZTFL1Q9NQ48 299 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ZNF355PQ9NSJ1 428 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 C19orf12Q9NSK7 152 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 MRM2Q9UI43 246 aaKnown RBP2.25□□□□□ -2.05
CD44-235ENST00000532339 ZNF391Q9UJN7 358 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ZNF222Q9UK12 451 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 SIGLEC7Q9Y286 467 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 ZNF257Q9Y2Q1 563 aa2.25□□□□□ -2.05
CD44-235ENST00000532339 SMIM26A0A096LP01 95 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 A0A0B4J2E0 115 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 GGT3PA6NGU5 568 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 C17orf98A8MV24 154 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 OR2T1O43869 369 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 RBP4P02753 201 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 COX5BP10606 129 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 CCL3L1P16619 93 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 PGAM1P18669 254 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 DTYMKP23919 212 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 KRTAP10-10P60014 251 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 RPL31P62899 125 aaKnown RBP2.24□□□□□ -2.05
CD44-235ENST00000532339 BNIP2Q12982 314 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 OR4D1Q15615 310 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 LCN8Q6JVE9 175 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 ZFP2Q6ZN57 461 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 FAM58AQ8N1B3 248 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 ASCC1Q8N9N2 400 aaKnown RBP2.24□□□□□ -2.05
CD44-235ENST00000532339 OR10G2Q8NGC3 310 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 OR5L1Q8NGL2 311 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 PTX4Q96A99 478 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 FAM19A4Q96LR4 140 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 GAFA1Q96PS6 74 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 CAMK2N2Q96S95 79 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 SDF2Q99470 211 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 ABCG5Q9H222 651 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 POPDC3Q9HBV1 291 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 RRAGDQ9NQL2 400 aaPredicted RBP2.24□□□□□ -2.05
CD44-235ENST00000532339 IFNKQ9P0W0 207 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 VPS29Q9UBQ0 182 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 RAB26Q9ULW5 256 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 OR51B2Q9Y5P1 312 aa2.24□□□□□ -2.05
CD44-235ENST00000532339 LEUTXA8MZ59 168 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 DEFB4AO15263 64 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 POLR3GO15318 223 aaPredicted RBP2.23□□□□□ -2.05
CD44-235ENST00000532339 SOCS1O15524 211 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 SNAI2O43623 268 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 NQO1P15559 274 aaKnown RBP2.23□□□□□ -2.05
CD44-235ENST00000532339 GRPRP30550 384 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 MNAT1P51948 309 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 TAS2R46P59540 309 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 PCBD1P61457 104 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 RPL23P62829 140 aaKnown RBP2.23□□□□□ -2.05
CD44-235ENST00000532339 PAFAH1B2P68402 229 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 BASP1P80723 227 aaKnown RBP2.23□□□□□ -2.05
CD44-235ENST00000532339 C2orf80Q0P641 193 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR8G1Q15617 311 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 FAM27BQ5VT28 67 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 LPCAT4Q643R3 524 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR2T5Q6IEZ7 315 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 C4orf22Q6V702 233 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 RIMKLAQ8IXN7 391 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR4P4Q8NGL7 312 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR2T29Q8NH02 315 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR11H2Q8NH07 326 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR4A5Q8NH83 315 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 ZNRF2Q8NHG8 242 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 ANGPTL6Q8NI99 470 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 SLC25A44Q96H78 314 aaPredicted RBP2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms