RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CAMTA1Q9Y6Y1 1673 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 C7orf71A4D174 169 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 GGT3PA6NGU5 568 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 B4DEV8 164 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 GGTLC3B5MD39 225 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 C8orf87E5RJ46 101 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 H3BQ15 152 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 LY6LH3BQJ8 138 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 H7C1H1 209 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 K7EPK0 472 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 REM1O75628 298 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 ARL6IP5O75915 188 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 SPINK8P0C7L1 97 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 ERGP11308 486 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 CRISP2P16562 243 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 OR10J1P30954 320 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 PPICP45877 212 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 ZNF83P51522 516 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 LYZP61626 148 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 FABP5Q01469 135 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 DAZ2Q13117 558 aaKnown RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 CATR1Q13166 79 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 IL15RAQ13261 267 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 C12orf74Q32Q52 190 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 LGALSLQ3ZCW2 172 aaPredicted RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 SPANXN3Q5MJ09 141 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 UNQ5815/PRO19632Q6UWF5 114 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 ACP7Q6ZNF0 438 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 TCF23Q7RTU1 214 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 DAZ4Q86SG3 579 aaKnown RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 LHFPL1Q86WI0 220 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 SGPP2Q8IWX5 399 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 RNF175Q8N4F7 328 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 FAM71E2Q8N5Q1 922 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 DEFB125Q8N687 156 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 NPWQ8N729 165 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 DCAF4L2Q8NA75 395 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 SUMF2Q8NBJ7 301 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 NPBQ8NG41 125 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 OR51G1Q8NGK1 321 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 PPTC7Q8NI37 304 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 TSLPQ969D9 159 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 FAM19A4Q96LR4 140 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 ERMAPQ96PL5 475 aaPredicted RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BLQ99880 126 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 GINS4Q9BRT9 223 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 ATG5Q9H1Y0 275 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 PDFQ9HBH1 243 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 DAZ1Q9NQZ3 744 aaKnown RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 DAZ3Q9NR90 486 aaKnown RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 RPRMQ9NS64 109 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 TNFRSF19Q9NS68 423 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 DNAJC27Q9NZQ0 273 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 KLF13Q9Y2Y9 288 aaPredicted RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 RNF11Q9Y3C5 154 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 MRPS16Q9Y3D3 137 aaKnown RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 SOX21Q9Y651 276 aaPredicted RBP2.32□□□□□ -2.04
CD44-229ENST00000528672 DENND4AQ7Z401 1863 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 MYOM2P54296 1465 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 SHANK2Q9UPX8 1470 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 AGRNO00468 2067 aa2.32□□□□□ -2.04
CD44-229ENST00000528672 CUL9Q8IWT3 2517 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 FOCADQ5VW36 1801 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 CROCCQ5TZA2 2017 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 A0A0D9SG52 128 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 IGHV1-69-2A0A0G2JMI3 117 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 A0A1B0GXF2 115 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 FAM183AA6NL82 134 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 RIIAD1A6NNX1 92 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ZNF705GA8MUZ8 300 aaPredicted RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 FNDC10F2Z333 226 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 LINC01619G3V211 115 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 G3V3Q6 166 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 J3QQQ9 107 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 MYL12BO14950 172 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 OR2A4O95047 310 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 SOD3P08294 240 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 BCL2P10415 239 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 FABP4P15090 132 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 CTLA4P16410 223 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 RPS4Y1P22090 263 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 CCL1P22362 96 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 PRSS3P35030 304 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 PFN2P35080 140 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 CCR2P41597 374 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ATP5G3P48201 142 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 P2RX1P51575 399 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 ZNF140P52738 457 aaPredicted RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 RBM11P57052 281 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 H2BFSP57053 126 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TPPP2P59282 170 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TAS2R46P59540 309 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 HERVK_113P61574 105 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 RPS23P62266 143 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 HBG1P69891 147 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 HBG2P69892 147 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 MYL5Q02045 173 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 C1DQ13901 141 aaKnown RBP2.31□□□□□ -2.04
CD44-229ENST00000528672 Q499Y3 187 aa2.31□□□□□ -2.04
CD44-229ENST00000528672 TCEAL5Q5H9L2 206 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms