RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 OR5B3Q8NH48 314 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 BET1LQ9NYM9 111 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 FUT9Q9Y231 359 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 SVILO95425 2214 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 CADP27708 2225 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 DSCAMO60469 2012 aa17.37■□□□□ 0.37
VPS28-205ENST00000526204 MDFIC2A0A1B0GVS7 189 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 SCO2A0A1W2PP80 73 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 DVL1O14640 695 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 KLK10O43240 276 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 C1QTNF9P0C862 333 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 CCKARP32238 428 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 CDPF1Q6NVV7 123 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 TMEM144Q7Z5S9 345 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 PRDM13Q9H4Q3 707 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 YTHDF2Q9Y5A9 579 aaKnown RBP17.36■□□□□ 0.37
VPS28-205ENST00000526204 ARL2-SNX15V9GYD0 113 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 RIF1Q5UIP0 2472 aaKnown RBP17.36■□□□□ 0.37
VPS28-205ENST00000526204 IGKV1-16P04430 117 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 IGFBP2P18065 325 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 CCL8P80075 99 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 ZNF114Q8NC26 417 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 PRSS33Q8NF86 280 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 UHRF2Q96PU4 802 aa17.36■□□□□ 0.37
VPS28-205ENST00000526204 TRBV20OR9-2A0A075B6H5 130 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 C17orf100A8MU93 164 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 PRRG2O14669 202 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 IL3RAP26951 378 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 C2orf83Q53S99 150 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 FAM209BQ5JX69 171 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 ZNF833PQ6ZTB9 187 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 OR5R1Q8NH85 324 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 OSR1Q8TAX0 266 aaPredicted RBP17.35■□□□□ 0.37
VPS28-205ENST00000526204 TMEM37Q8WXS4 190 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 AURKAIP1Q9NWT8 199 aaPredicted RBP17.35■□□□□ 0.37
VPS28-205ENST00000526204 SLC25A10Q9UBX3 287 aaPredicted RBP17.35■□□□□ 0.37
VPS28-205ENST00000526204 SLC45A2Q9UMX9 530 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 ZFHX2Q9C0A1 2572 aaPredicted RBP17.35■□□□□ 0.37
VPS28-205ENST00000526204 SRRM4A7MD48 611 aaKnown RBP17.35■□□□□ 0.37
VPS28-205ENST00000526204 AMBPP02760 352 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 LINC00869P0C866 280 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 MYOD1P15172 320 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 SSX8Q7RTT4 187 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 C11orf52Q96A22 123 aa17.35■□□□□ 0.37
VPS28-205ENST00000526204 TET2Q6N021 2002 aaPredicted RBP17.34■□□□□ 0.37
VPS28-205ENST00000526204 TEX50A0A1B0GTY4 177 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 MKRN2OSH3BPM6 223 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 AREGP15514 252 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 RPL31P62899 125 aaKnown RBP17.34■□□□□ 0.37
VPS28-205ENST00000526204 ADIPOQQ15848 244 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 SPATA31B1PQ5VZV4 182 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 OR4P4Q8NGL7 312 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 SNRNP40Q96DI7 357 aaKnown RBP17.34■□□□□ 0.37
VPS28-205ENST00000526204 SLC35E1Q96K37 410 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 C19orf24Q9BVV8 132 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 DCAF16Q9NXF7 216 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 LY96Q9Y6Y9 160 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 SPENQ96T58 3664 aaKnown RBP17.34■□□□□ 0.37
VPS28-205ENST00000526204 DSCAML1Q8TD84 2053 aa17.34■□□□□ 0.37
VPS28-205ENST00000526204 A0A0U1RQK1 487 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 ZNF320A2RRD8 509 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 APOA2P02652 100 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 OR4A8P0C604 315 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 JOSD1Q15040 202 aaPredicted RBP17.33■□□□□ 0.37
VPS28-205ENST00000526204 LURAP1LQ8IV03 231 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 OR1L8Q8NGR8 309 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 SGMS2Q8NHU3 365 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 LRFN3Q9BTN0 628 aa17.33■□□□□ 0.37
VPS28-205ENST00000526204 A0A0G2JNJ9 132 aa17.33■□□□□ 0.36
VPS28-205ENST00000526204 PGPEP1LA6NFU8 196 aa17.33■□□□□ 0.36
VPS28-205ENST00000526204 GATCO43716 136 aaKnown RBP17.33■□□□□ 0.36
VPS28-205ENST00000526204 DOLPP1Q86YN1 238 aa17.33■□□□□ 0.36
VPS28-205ENST00000526204 OCC1Q8TAD7 63 aa17.33■□□□□ 0.36
VPS28-205ENST00000526204 TMEM167BQ9NRX6 74 aa17.33■□□□□ 0.36
VPS28-205ENST00000526204 Q9UFV3 132 aa17.33■□□□□ 0.36
VPS28-205ENST00000526204 TRBV23-1A0A0A0MS06 115 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 C9JCJ5 164 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 FOXH1O75593 365 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 RD3LP0DJH9 198 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 SAA1P0DJI8 122 aaPredicted RBP17.32■□□□□ 0.36
VPS28-205ENST00000526204 RPL15P61313 204 aaKnown RBP17.32■□□□□ 0.36
VPS28-205ENST00000526204 WFDC8Q8IUA0 241 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 OR10G8Q8NGN5 311 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 CNN1P51911 297 aaKnown RBP17.32■□□□□ 0.36
VPS28-205ENST00000526204 GAMTQ14353 236 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 TEX38Q6PEX7 206 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 PNKDQ8N490 385 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 ZNF714Q96N38 554 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 NABP2Q9BQ15 211 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 TRAPPC1Q9Y5R8 145 aa17.32■□□□□ 0.36
VPS28-205ENST00000526204 TANC2Q9HCD6 1990 aa17.31■□□□□ 0.36
VPS28-205ENST00000526204 DPRXA6NFQ7 191 aa17.31■□□□□ 0.36
VPS28-205ENST00000526204 TRAV9-1A0A075B6T8 112 aa17.3■□□□□ 0.36
VPS28-205ENST00000526204 PKIAP61925 76 aa17.3■□□□□ 0.36
VPS28-205ENST00000526204 C9orf152Q5JTZ5 239 aa17.3■□□□□ 0.36
VPS28-205ENST00000526204 RND1Q92730 232 aa17.3■□□□□ 0.36
VPS28-205ENST00000526204 TECRQ9NZ01 308 aaKnown RBP17.3■□□□□ 0.36
VPS28-205ENST00000526204 ZNRD1Q9P1U0 126 aa17.3■□□□□ 0.36
VPS28-205ENST00000526204 MUC6Q6W4X9 2439 aa17.3■□□□□ 0.36
VPS28-205ENST00000526204 MIR17HGQ75NE6 70 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms