RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 OR2G3Q8NGZ4 309 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 OR8S1Q8NH09 359 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 ZNF675Q8TD23 568 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 KLK6Q92876 244 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 ROPN1LQ96C74 230 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 FCRL1Q96LA6 429 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 SIGLEC12Q96PQ1 595 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 SMIM14Q96QK8 99 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 TRIB3Q96RU7 358 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 LYSMD1Q96S90 227 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 PAXXQ9BUH6 204 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 PRTFDC1Q9NRG1 225 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 RPL26L1Q9UNX3 145 aaKnown RBP3.44□□□□□ -1.86
CD44-220ENST00000525688 WASHC3Q9Y3C0 194 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 LAMA5O15230 3695 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 TRPM6Q9BX84 2022 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 ADAMTS9Q9P2N4 1935 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 ITPR1Q14643 2758 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 EPG5Q9HCE0 2579 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 ACACBO00763 2458 aa3.44□□□□□ -1.86
CD44-220ENST00000525688 SHROOM3Q8TF72 1996 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 LOC400499M0QZD8 3231 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 HCFC1P51610 2035 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 ANKRD36A6QL64 1941 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 SMIM26A0A096LP01 95 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 A0A096LPI6 279 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 TRAV8-3A0A0A6YYJ7 113 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 IGHV7-81A0A0B4J1V7 117 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 TRAV26-2A0A0B4J265 109 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 IGHV1-69DA0A0B4J2H0 117 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 LOC285095A0A1B0GVY8 99 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 A0A1B0GX51 115 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 K7EPK0 472 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 UPK1AO00322 258 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 KCNK2O95069 426 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 IGF2P01344 180 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 SERPINE1P05121 402 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 CTLA4P16410 223 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 APLNRP35414 380 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 MDH2P40926 338 aaKnown RBP3.43□□□□□ -1.86
CD44-220ENST00000525688 CTBP2P56545 445 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 PIGPP57054 158 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 KLF3P57682 345 aaPredicted RBP3.43□□□□□ -1.86
CD44-220ENST00000525688 GNG2P59768 71 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 RPS20P60866 119 aaKnown RBP3.43□□□□□ -1.86
CD44-220ENST00000525688 NCALDP61601 193 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 RRAS2P62070 204 aaPredicted RBP3.43□□□□□ -1.86
CD44-220ENST00000525688 FABP5Q01469 135 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 PRR4Q16378 134 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 FBXL19-AS1Q494R0 122 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 C6orf99Q4VX62 202 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 ATP6AP1LQ52LC2 224 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 Q6ZRU5 148 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 SLC25A45Q8N413 288 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 GDPD1Q8N9F7 314 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 DEFB124Q8NES8 71 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 OR13C4Q8NGS5 318 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 OR5K1Q8NHB7 308 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 TYMSOSQ8TAI1 123 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 CT55Q8WUE5 264 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 TMEM159Q96B96 161 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 C14orf144Q96I85 54 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 SLC35E1Q96K37 410 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 SERPINI1Q99574 410 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 DOHHQ9BU89 302 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 PBDC1Q9BVG4 233 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 MND1Q9BWT6 205 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 TMEM222Q9H0R3 208 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 HMG20AQ9NP66 347 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 RBM12B-AS1Q9P1G2 102 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 HSPB8Q9UJY1 196 aa3.43□□□□□ -1.86
CD44-220ENST00000525688 RBM7Q9Y580 266 aaKnown RBP3.43□□□□□ -1.86
CD44-220ENST00000525688 TPRP12270 2363 aaKnown RBP3.43□□□□□ -1.86
CD44-220ENST00000525688 KMT2BQ9UMN6 2715 aaPredicted RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 IGF2RP11717 2491 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 IGLV8-61A0A075B6I0 122 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 IGKV1-8A0A0C4DH67 115 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 SPAARA0A1B0GVQ0 90 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 TMEM189A5PLL7 270 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 KLLNB2CW77 178 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 J3KT08 172 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 ZNF780AO75290 641 aaPredicted RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 BANF1O75531 89 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 POP7O75817 140 aaKnown RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 TNFSF15O95150 251 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 SOD1P00441 154 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 IFNA4P05014 189 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 S100A8P05109 93 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 DBIP07108 87 aaKnown RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 LGALS1P09382 135 aaKnown RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 CECR9P0C854 216 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 UBBP0CG47 229 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 IGHV3-43DP0DP04 118 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 ZNF25P17030 456 aaPredicted RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 ZNF30P17039 623 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 CCL1P22362 96 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 GADD45AP24522 165 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 GFERP55789 205 aa3.42□□□□□ -1.86
CD44-220ENST00000525688 SNRPD2P62316 118 aaKnown RBP3.42□□□□□ -1.86
CD44-220ENST00000525688 ARFRP1Q13795 201 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms