RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 FAM71E2Q8N5Q1 922 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TEX29Q8N6K0 151 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 OR2M3Q8NG83 312 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 OR51T1Q8NGJ9 327 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 OR2A12Q8NGT7 310 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 SLC25A40Q8TBP6 338 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 NT5CQ8TCD5 201 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 LMX1AQ8TE12 382 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 ITLN1Q8WWA0 313 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 PSMF1Q92530 271 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BHQ93079 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 STARD4Q96DR4 205 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 CYYR1Q96J86 154 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 FAM19A4Q96LR4 140 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 AP1S3Q96PC3 154 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 ERMAPQ96PL5 475 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 OR2A7Q96R45 310 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 GPR21Q99679 349 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BNQ99877 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 HIST1H2BMQ99879 126 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 SAMD10Q9BYL1 202 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TCEAL2Q9H3H9 227 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 EXOSC3Q9NQT5 275 aaKnown RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 OTORQ9NRC9 128 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 SPANXCQ9NY87 97 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 TAS2R8Q9NYW2 309 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 DNAJC27Q9NZQ0 273 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 PCTPQ9UKL6 214 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 SIGLEC7Q9Y286 467 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 AMMECR1Q9Y4X0 333 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 FLVCR1Q9Y5Y0 555 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 DENND4BO75064 1496 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 ERVK-7P63135 1459 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 MYH3P11055 1940 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 KDM6AO15550 1401 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 PRG4Q92954 1404 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 COL22A1Q8NFW1 1626 aaPredicted RBP1.73□□□□□ -2.13
CD44-216ENST00000525293 PHIPQ8WWQ0 1821 aa1.73□□□□□ -2.13
CD44-216ENST00000525293 UGGT2Q9NYU1 1516 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ADAMTSL3P82987 1691 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 MYOM2P54296 1465 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 MAGI2Q86UL8 1455 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 IGLV1-36A0A0B4J1U3 117 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TEX50A0A1B0GTY4 177 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TRDV1A0A1B0GX56 115 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 RBMY1BA6NDE4 496 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 RBMY1EA6NEQ0 496 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 KNCNA6PVL3 124 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 BBIP1A8MTZ0 92 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 LINC01619G3V211 115 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 K7EP34 96 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 CDC42EP2O14613 210 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 DPM2O94777 84 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 FGF1P05230 155 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 MRPL3P09001 348 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 RBMY1DP0C7P1 496 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 RBMY1A1P0DJD3 496 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 NFYAP23511 347 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 FCGR2CP31995 323 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 DRD3P35462 400 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 PPP1CCP36873 323 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 POLR2IP36954 125 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 MYCNOSP40205 109 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 RPS10P46783 165 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 NMUP48645 174 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 HNRNPA3P51991 378 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 ZNF140P52738 457 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 H2BFSP57053 126 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TAS2R46P59540 309 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 LYZP61626 148 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 KLRD1Q13241 179 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ARFRP1Q13795 201 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 OR7A5Q15622 319 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ECSCRQ19T08 205 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 AADACL3Q5VUY0 350 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 Q6AWC8 147 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 OR2T2Q6IF00 324 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 EIF5AL1Q6IS14 154 aaKnown RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 ZNF773Q6PK81 442 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 SBSNQ6UWP8 590 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 LCN15Q6UWW0 184 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 HEPN1Q6WQI6 88 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ACP7Q6ZNF0 438 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TEX43Q6ZNM6 134 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ZNF493Q6ZR52 646 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 Q6ZUT4 128 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TCF23Q7RTU1 214 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ZNF571Q7Z3V5 609 aaPredicted RBP1.72□□□□□ -2.13
CD44-216ENST00000525293 FAM19A3Q7Z5A8 133 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TMEM179BQ7Z7N9 219 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 LINC00596Q86U02 117 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 PCP2Q8IVA1 136 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 TMEM183AQ8IXX5 376 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 C20orf196Q8IYI0 205 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 SLC25A45Q8N413 288 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 ZNF491Q8N8L2 437 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 SUMF2Q8NBJ7 301 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 WFDC11Q8NEX6 87 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 OR52R1Q8NGF1 315 aa1.72□□□□□ -2.13
CD44-216ENST00000525293 PPTC7Q8NI37 304 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms