RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PAXXQ9BUH6 204 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 TOLLIPQ9H0E2 274 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 IGHV3OR16-13A0A075B7E8 117 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 IGHV3-74A0A0B4J1X5 117 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 CLN5O75503 358 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 TMEM30BQ3MIR4 351 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 PCSK4Q6UW60 755 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 C16orf82Q7Z2V1 217 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 IGHV3OR16-8A0A075B7F1 116 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 IGKV1-6A0A0C4DH72 117 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 HELTA6NFD8 242 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 MPDU1O75352 247 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 COL8A2P25067 703 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 MEF2BQ02080 365 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-207ENST00000504761 SLC16A13Q7RTY0 426 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 TMEM133Q9H2Q1 129 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 EML6Q6ZMW3 1958 aa11.69□□□□□ -0.54
TCOF1-207ENST00000504761 WIPF3A6NGB9 483 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 SMAD7O15105 426 aaKnown RBP11.68□□□□□ -0.54
TCOF1-207ENST00000504761 SLC31A2O15432 143 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 LDLRAD3Q86YD5 345 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 DPF1Q92782 380 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 TCEAL7Q9BRU2 100 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 ZNRD1Q9P1U0 126 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 RPUSD1Q9UJJ7 312 aaKnown RBP11.68□□□□□ -0.54
TCOF1-207ENST00000504761 ID3Q02535 119 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 TMEM200BQ69YZ2 307 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 CEP192Q8TEP8 1941 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 OR9G9P0C7N8 305 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 RCC1LQ96I51 464 aaKnown RBP11.68□□□□□ -0.54
TCOF1-207ENST00000504761 GATCO43716 136 aaKnown RBP11.68□□□□□ -0.54
TCOF1-207ENST00000504761 BATFQ16520 125 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 DUX4L9Q6RFH8 374 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-207ENST00000504761 WFDC3Q8IUB2 231 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 RNF2Q99496 336 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 C7orf69Q9H7B7 122 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 ZNF430Q9H8G1 570 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-207ENST00000504761 DKK4Q9UBT3 224 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 NAT8BQ9UHF3 227 aa11.68□□□□□ -0.54
TCOF1-207ENST00000504761 RRHO14718 337 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 IGHV3-23P01764 117 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 RD3LP0DJH9 198 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 C10orf55Q5SWW7 151 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 OR10G8Q8NGN5 311 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 OR4A5Q8NH83 315 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 LIME1Q9H400 295 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 FAM74A7A6NL05 159 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 TGFAP01135 160 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 ARL14EPLP0DKL9 152 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 S100A4P26447 101 aaKnown RBP11.67□□□□□ -0.54
TCOF1-207ENST00000504761 SNRPEP62304 92 aaKnown RBP11.67□□□□□ -0.54
TCOF1-207ENST00000504761 FAM74A3Q4VXF1 159 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 NCMAPQ5T1S8 102 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 DNM1P46Q6ZS02 220 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 STPG3Q8N7X2 389 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 NIT2Q9NQR4 276 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 HIGD1AQ9Y241 93 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 OR2T10Q8NGZ9 312 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 NABP2Q9BQ15 211 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 TRAPPC1Q9Y5R8 145 aa11.67□□□□□ -0.54
TCOF1-207ENST00000504761 IGFBP2P18065 325 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 GRNP28799 593 aaKnown RBP11.66□□□□□ -0.54
TCOF1-207ENST00000504761 DLX1P56177 255 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 PNRC1Q12796 327 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-207ENST00000504761 IGFL2Q6UWQ7 119 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-207ENST00000504761 CHRDL1Q9BU40 450 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 NAGKQ9UJ70 344 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 NAV2Q8IVL1 2488 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 LINC00473A8K010 186 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 RFNGQ9Y644 331 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 ZFYVE26Q68DK2 2539 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 FCGR2BP31994 310 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-207ENST00000504761 SLC35B1P78383 322 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 NUP37Q8NFH4 326 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 NPCDR1Q9BY65 106 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 DNASE2O00115 360 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-207ENST00000504761 IGKV1-5P01602 117 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 CFPP27918 469 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 GAFA1Q96PS6 74 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 DNAJC4Q9NNZ3 241 aa11.66□□□□□ -0.54
TCOF1-207ENST00000504761 TMSB15BA0A087X1C1 80 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 SELENOTP62341 195 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 ZNF525Q8N782 197 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 OR4D5Q8NGN0 318 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 LOXL3P58215 753 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 RABAC1Q9UI14 185 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 FCN1O00602 326 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 OR2J3O76001 311 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 IGLV3-1P01715 115 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 FABP4P15090 132 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 KLRD1Q13241 179 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 HLA-DRB5Q30154 266 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 HEPN1Q6WQI6 88 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 OR10W1Q8NGF6 305 aa11.65□□□□□ -0.54
TCOF1-207ENST00000504761 IGHV3-49A0A0A0MS15 119 aa11.64□□□□□ -0.55
TCOF1-207ENST00000504761 TRAV3A0A0B4J244 114 aa11.64□□□□□ -0.55
TCOF1-207ENST00000504761 A0A0G2JRQ6 117 aa11.64□□□□□ -0.55
TCOF1-207ENST00000504761 XKRY2A2RUG3 117 aa11.64□□□□□ -0.55
TCOF1-207ENST00000504761 PDE6DO43924 150 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms