RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GAMTQ14353 236 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 PARD6GQ9BYG4 376 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 VSIRQ9H7M9 311 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 CGAP01215 116 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 GPX4P36969 197 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 NHLH1Q02575 133 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 TMEM144Q7Z5S9 345 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 RBM14Q96PK6 669 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 WDR83OSQ9Y284 106 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 SLC25A15Q9Y619 301 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 UBE2CO00762 179 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 OR5AL1P0C617 328 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 FXYD3Q14802 87 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 HEPN1Q6WQI6 88 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 OR5R1Q8NH85 324 aa8.97□□□□□ -0.97
LIMCH1-205ENST00000503057 SAA1P0DJI8 122 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 ECSCRQ19T08 205 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 TMEM14EPQ6UXP3 125 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 ZNF788Q6ZQV5 615 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 LINC00305Q7Z4B0 112 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 ADCYAP1P18509 176 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 MFAP4P55083 255 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 MST1LQ2TV78 715 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 FAM169BQ8N8A8 192 aa8.96□□□□□ -0.97
LIMCH1-205ENST00000503057 SDK2Q58EX2 2172 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 LOC105371242A0A075B767 164 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 DKK1O94907 266 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 CSN3P07498 182 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 KLRB1Q12918 225 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 VAMP3Q15836 100 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 C20orf204Q6ZNR8 217 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 CD177Q8N6Q3 437 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 TMEM171Q8WVE6 324 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 IGHV1-46P01743 117 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 CD99P14209 185 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 G0S2P27469 103 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 PNKDQ8N490 385 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 BET1LQ9NYM9 111 aa8.96□□□□□ -0.98
LIMCH1-205ENST00000503057 RPL30P62888 115 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 C5orf24Q7Z6I8 188 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 C1QL4Q86Z23 238 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 IGKV3-15P01624 115 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 ORM1P02763 201 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 PSG9Q00887 426 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 PRCDQ00LT1 54 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 CDC42EP3Q9UKI2 254 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 PAM16Q9Y3D7 125 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 AHCTF1Q8WYP5 2266 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 PHF3Q92576 2039 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 MBD3L4A6NDZ8 208 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 MBD3L3A6NE82 208 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 MBD3L5A6NJ08 208 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 DDTP30046 118 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 ZNF137PP52743 207 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 MIR17HGQ75NE6 70 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 MBD3L2Q8NHZ7 208 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 CHODLQ9H9P2 273 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 ALPK3Q96L96 1907 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 KHDC1LQ5JSQ8 128 aa8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 ZMAT5Q9UDW3 170 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 FOXA2Q9Y261 457 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-205ENST00000503057 FOXI3A8MTJ6 420 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 SNRPCP09234 159 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 TRAV34A0A0B4J273 112 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 CA7P43166 264 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 OR4B1Q8NGF8 309 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 LINC01560Q8TB33 94 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 IGKV1-6A0A0C4DH72 117 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 TMEM189A5PLL7 270 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 MOSP00540 346 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 PPOXP50336 477 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 ARF6P62330 175 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 TMEM177Q53S58 311 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 COQ2Q96H96 371 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 MBNL3Q9NUK0 354 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 BMPR1BO00238 502 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 MLNRO43193 412 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 RPLP1P05386 114 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 MAS1LP35410 378 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 LBHQ53QV2 105 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 RNFT1Q5M7Z0 435 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 HS3ST6Q96QI5 342 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 TMEM131Q92545 1883 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 ZNF257Q9Y2Q1 563 aa8.94□□□□□ -0.98
LIMCH1-205ENST00000503057 NTF4P34130 210 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 FAM209BQ5JX69 171 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 A0A0G2JRQ6 117 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 SRIP30626 198 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 TREML4Q6UXN2 200 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 TMEM170AQ8WVE7 144 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 C5orf52A6NGY3 159 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 OR2T8A6NH00 312 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 FAM87AP0C7U9 286 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 CCL3L1P16619 93 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 CBLN1P23435 193 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 FCGR2BP31994 310 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 HOXA4Q00056 320 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 TMEM97Q5BJF2 176 aa8.93□□□□□ -0.98
LIMCH1-205ENST00000503057 NUP37Q8NFH4 326 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms